Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.71■□□□□ 0.26
TRAV41A0A0B4J266 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 AC010542.4-201ENST00000563151 1910 ntBASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
TRAV41A0A0B4J266 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV41A0A0B4J266 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 NTF6G-201ENST00000591094 616 ntBASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV41A0A0B4J266 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV41A0A0B4J266 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms