Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PTK2-232ENST00000521395 540 ntTSL 48.32□□□□□ -1.081e-7■■■■□ 22.4
SF3B1O75533 PTK2-222ENST00000520475 570 ntTSL 58.02□□□□□ -1.131e-7■■■■□ 22.4
SF3B1O75533 XPO1-207ENST00000436018 318 ntTSL 43.7□□□□□ -1.828e-7■■■■□ 22.4
SF3B1O75533 SREBF1-217ENST00000577897 536 ntTSL 414.94□□□□□ -0.024e-7■■■■□ 22.3
SF3B1O75533 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.092e-6■■■■□ 22.3
SF3B1O75533 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.632e-6■■■■□ 22.3
SF3B1O75533 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.712e-6■■■■□ 22.3
SF3B1O75533 CERS2-203ENST00000361419 997 ntTSL 233.25■■■□□ 2.911e-10■■■■□ 22.3
SF3B1O75533 SRSF7-212ENST00000487773 637 ntTSL 54.48□□□□□ -1.691e-10■■■■□ 22.3
SF3B1O75533 SRSF7-207ENST00000432873 603 ntTSL 33.53□□□□□ -1.841e-10■■■■□ 22.3
SF3B1O75533 PPP2R5C-224ENST00000556946 735 ntTSL 2 BASIC12.47□□□□□ -0.411e-6■■■■□ 22.2
SF3B1O75533 PPP2R5C-230ENST00000557714 536 ntTSL 4 BASIC11.02□□□□□ -0.651e-6■■■■□ 22.2
SF3B1O75533 EZH2-205ENST00000476773 2572 ntTSL 2 BASIC9.35□□□□□ -0.911e-6■■■■□ 22.2
SF3B1O75533 SRSF11-211ENST00000473950 796 ntTSL 526.3■■□□□ 1.84e-7■■■■□ 22.2
SF3B1O75533 SRSF11-212ENST00000475204 760 ntTSL 524.98■■□□□ 1.594e-7■■■■□ 22.2
SF3B1O75533 HNRNPC-228ENST00000557033 760 ntTSL 310.73□□□□□ -0.696e-9■■■■□ 22.2
SF3B1O75533 FASTKD1-203ENST00000445210 1850 ntTSL 29.83□□□□□ -0.846e-9■■■■□ 22.2
SF3B1O75533 FASTKD1-202ENST00000438035 1045 ntTSL 1 (best)7.36□□□□□ -1.236e-9■■■■□ 22.2
SF3B1O75533 HNRNPC-215ENST00000555127 929 ntTSL 27.07□□□□□ -1.286e-9■■■■□ 22.2
SF3B1O75533 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.296e-9■■■■□ 22.2
SF3B1O75533 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.56□□□□□ -1.846e-9■■■■□ 22.2
SF3B1O75533 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.722e-6■■■■□ 22.1
SF3B1O75533 RABGGTB-213ENST00000496055 3863 ntTSL 24.59□□□□□ -1.672e-6■■■■□ 22.1
SF3B1O75533 RABGGTB-210ENST00000485459 788 ntTSL 53.8□□□□□ -1.82e-6■■■■□ 22.1
SF3B1O75533 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.822e-6■■■■□ 22.1
SF3B1O75533 ATXN2L-216ENST00000564656 552 ntTSL 416.3■□□□□ 0.27e-8■■■■□ 22
SF3B1O75533 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.23□□□□□ -1.093e-7■■■■□ 22
SF3B1O75533 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.33e-7■■■■□ 22
SF3B1O75533 GPI-212ENST00000589985 1516 ntTSL 319.9■□□□□ 0.782e-9■■■■□ 22
SF3B1O75533 YBX1-203ENST00000436427 1524 ntTSL 1 (best)22.75■■□□□ 1.233e-7■■■■□ 21.9
SF3B1O75533 FLOT1-211ENST00000484693 1001 ntTSL 221.21■□□□□ 0.993e-7■■■■□ 21.9
SF3B1O75533 POLRMT-201ENST00000587057 1229 ntTSL 520.51■□□□□ 0.873e-7■■■■□ 21.9
SF3B1O75533 POLRMT-203ENST00000589961 490 ntTSL 320.27■□□□□ 0.833e-7■■■■□ 21.9
SF3B1O75533 POLRMT-207ENST00000592633 469 ntTSL 216.74■□□□□ 0.273e-7■■■■□ 21.9
SF3B1O75533 SRRT-214ENST00000614370 556 ntTSL 216.46■□□□□ 0.233e-7■■■■□ 21.9
SF3B1O75533 ZNF316-202ENST00000427912 520 ntTSL 315.76■□□□□ 0.113e-7■■■■□ 21.9
SF3B1O75533 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC12.83□□□□□ -0.363e-7■■■■□ 21.9
SF3B1O75533 SRRT-202ENST00000431645 397 ntTSL 212.44□□□□□ -0.423e-7■■■■□ 21.9
SF3B1O75533 POLRMT-204ENST00000590336 380 ntTSL 39.04□□□□□ -0.963e-7■■■■□ 21.9
SF3B1O75533 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC8.82□□□□□ -13e-7■■■■□ 21.9
SF3B1O75533 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.013e-7■■■■□ 21.9
SF3B1O75533 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.163e-7■■■■□ 21.9
SF3B1O75533 PSMD11-209ENST00000580904 540 ntTSL 47.67□□□□□ -1.183e-7■■■■□ 21.9
SF3B1O75533 SRRM2-229ENST00000576894 2210 ntTSL 1 (best)21.31■■□□□ 15e-7■■■■□ 21.9
SF3B1O75533 EZH2-204ENST00000469631 414 ntTSL 28□□□□□ -1.131e-6■■■■□ 21.9
SF3B1O75533 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.451e-6■■■■□ 21.8
SF3B1O75533 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.021e-6■■■■□ 21.8
SF3B1O75533 HNRNPH3-205ENST00000469172 3356 ntTSL 210.5□□□□□ -0.731e-6■■■■□ 21.8
SF3B1O75533 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.823e-6■■■■□ 21.8
SF3B1O75533 HSPD1-201ENST00000345042 2299 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.313e-6■■■■□ 21.8
SF3B1O75533 HSPD1-214ENST00000491249 860 ntTSL 27.55□□□□□ -1.23e-6■■■■□ 21.8
SF3B1O75533 RPL18-213ENST00000552347 1645 ntTSL 519.21■□□□□ 0.679e-7■■■■□ 21.8
SF3B1O75533 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.639e-7■■■■□ 21.8
SF3B1O75533 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.99■□□□□ 0.639e-7■■■■□ 21.8
SF3B1O75533 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.99■□□□□ 0.639e-7■■■■□ 21.8
SF3B1O75533 RPL18-212ENST00000551749 2091 ntTSL 217.94■□□□□ 0.469e-7■■■■□ 21.8
SF3B1O75533 RPL18-206ENST00000549370 628 ntTSL 517.58■□□□□ 0.49e-7■■■■□ 21.8
SF3B1O75533 RPL18-204ENST00000547897 440 ntTSL 515.01□□□□□ -0.019e-7■■■■□ 21.8
SF3B1O75533 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC14.41□□□□□ -0.19e-7■■■■□ 21.8
SF3B1O75533 RPL18-215ENST00000552705 1081 ntTSL 214.15□□□□□ -0.149e-7■■■■□ 21.8
SF3B1O75533 RPL18-210ENST00000550671 764 ntTSL 213.98□□□□□ -0.179e-7■■■■□ 21.8
SF3B1O75533 RPL18-216ENST00000552851 691 ntTSL 513.6□□□□□ -0.239e-7■■■■□ 21.8
SF3B1O75533 RPL18-203ENST00000547892 3844 nt12.08□□□□□ -0.489e-7■■■■□ 21.8
SF3B1O75533 SRRM2-206ENST00000571041 498 ntTSL 416.76■□□□□ 0.272e-25■■■■□ 21.7
SF3B1O75533 SRRM2-204ENST00000570705 675 ntTSL 316.62■□□□□ 0.252e-25■■■■□ 21.7
SF3B1O75533 GNAS-256ENST00000603546 573 ntTSL 529.99■■■□□ 2.392e-6■■■■□ 21.7
SF3B1O75533 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC8.15□□□□□ -1.13e-7■■■■□ 21.6
SF3B1O75533 RPL17-216ENST00000582935 469 ntTSL 212.72□□□□□ -0.372e-6■■■■□ 21.6
SF3B1O75533 RPL17-213ENST00000581741 596 ntTSL 28.69□□□□□ -1.022e-6■■■■□ 21.6
SF3B1O75533 RPL17-219ENST00000584364 523 ntTSL 24.57□□□□□ -1.682e-6■■■■□ 21.6
SF3B1O75533 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)18.02■□□□□ 0.481e-6■■■■□ 21.5
SF3B1O75533 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.411e-6■■■■□ 21.5
SF3B1O75533 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.331e-6■■■■□ 21.5
SF3B1O75533 LARS-214ENST00000512412 575 ntTSL 58.46□□□□□ -1.061e-9■■■■□ 21.5
SF3B1O75533 HBP1-202ENST00000461963 581 ntTSL 55.46□□□□□ -1.542e-6■■■■□ 21.5
SF3B1O75533 HBP1-211ENST00000483809 582 ntTSL 23.84□□□□□ -1.792e-6■■■■□ 21.5
SF3B1O75533 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.524e-6■■■■□ 21.5
SF3B1O75533 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.65■■□□□ 1.224e-6■■■■□ 21.5
SF3B1O75533 PDIA6-204ENST00000404824 2236 ntTSL 2 BASIC12.52□□□□□ -0.414e-6■■■■□ 21.5
SF3B1O75533 PDIA6-208ENST00000617249 2344 ntTSL 5 BASIC12.21□□□□□ -0.464e-6■■■■□ 21.5
SF3B1O75533 PDIA6-202ENST00000381611 2534 ntTSL 2 BASIC10.54□□□□□ -0.724e-6■■■■□ 21.5
SF3B1O75533 PDIA6-203ENST00000404371 2682 ntTSL 2 BASIC10.23□□□□□ -0.774e-6■■■■□ 21.5
SF3B1O75533 SMG1P3-205ENST00000522480 4262 ntBASIC11.41□□□□□ -0.581e-8■■■■□ 21.5
SF3B1O75533 MVD-210ENST00000565610 507 ntTSL 321.66■■□□□ 1.063e-6■■■■□ 21.4
SF3B1O75533 MVD-207ENST00000563463 543 ntTSL 317.6■□□□□ 0.413e-6■■■■□ 21.4
SF3B1O75533 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.885e-8■■■■□ 21.4
SF3B1O75533 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.1□□□□□ -1.275e-8■■■■□ 21.4
SF3B1O75533 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.57□□□□□ -1.525e-8■■■■□ 21.4
SF3B1O75533 CCNL2-205ENST00000425598 661 ntTSL 522.94■■□□□ 1.269e-8■■■■□ 21.4
SF3B1O75533 SEPT6-208ENST00000481072 836 ntTSL 214.77□□□□□ -0.049e-8■■■■□ 21.4
SF3B1O75533 SEPT6-207ENST00000467310 1061 ntTSL 310.39□□□□□ -0.759e-8■■■■□ 21.4
SF3B1O75533 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.215e-6■■■■□ 21.4
SF3B1O75533 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.05□□□□□ -1.445e-6■■■■□ 21.4
SF3B1O75533 FASN-203ENST00000579410 424 ntTSL 211.36□□□□□ -0.599e-7■■■■□ 21.4
SF3B1O75533 LARS-204ENST00000504323 608 ntTSL 39.59□□□□□ -0.877e-8■■■■□ 21.3
SF3B1O75533 LARS-210ENST00000508667 707 ntTSL 38.98□□□□□ -0.977e-8■■■■□ 21.3
SF3B1O75533 LARS-209ENST00000507095 384 ntTSL 36.09□□□□□ -1.437e-8■■■■□ 21.3
SF3B1O75533 HNRNPA2B1-203ENST00000360787 1724 ntTSL 515.53■□□□□ 0.082e-7■■■■□ 21.3
SF3B1O75533 HNRNPA2B1-206ENST00000490912 5328 ntTSL 215.22■□□□□ 0.032e-7■■■■□ 21.3
SF3B1O75533 HNRNPA2B1-204ENST00000463181 6284 ntTSL 214□□□□□ -0.172e-7■■■■□ 21.3
Retrieved 100 of 46,956 protein–RNA pairs in 3962.9 ms