Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC3Q9NQT5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 AC105265.2-201ENST00000467189 838 ntBASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC3Q9NQT5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 IRS3P-201ENST00000223076 1006 ntBASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
EXOSC3Q9NQT5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC3Q9NQT5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC3Q9NQT5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 Z98882.1-201ENST00000622160 2253 ntBASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 TPRG1LP1-201ENST00000598702 760 ntBASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.4■□□□□ 0.7
EXOSC3Q9NQT5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms