Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS35Q96QK1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
VPS35Q96QK1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.1■□□□□ 0.97
VPS35Q96QK1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 KRT18P5-201ENST00000436075 1291 ntBASIC21.1■□□□□ 0.97
VPS35Q96QK1 AL162430.1-201ENST00000480705 870 ntBASIC21.1■□□□□ 0.97
VPS35Q96QK1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
VPS35Q96QK1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS35Q96QK1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 AC003102.1-202ENST00000563394 1796 ntBASIC21.1■□□□□ 0.97
VPS35Q96QK1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS35Q96QK1 AC026471.6-201ENST00000622954 1905 ntBASIC21.1■□□□□ 0.97
VPS35Q96QK1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 AP004607.4-201ENST00000530158 1459 ntBASIC21.09■□□□□ 0.97
VPS35Q96QK1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS35Q96QK1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS35Q96QK1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
VPS35Q96QK1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS35Q96QK1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS35Q96QK1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 NTF6G-201ENST00000591094 616 ntBASIC21.08■□□□□ 0.97
VPS35Q96QK1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS35Q96QK1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS35Q96QK1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS35Q96QK1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS35Q96QK1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 EEF1DP3-203ENST00000566025 782 ntBASIC21.07■□□□□ 0.96
VPS35Q96QK1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS35Q96QK1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS35Q96QK1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 AC004854.2-201ENST00000608450 1441 ntBASIC21.06■□□□□ 0.96
VPS35Q96QK1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS35Q96QK1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 KRT18P61-201ENST00000585825 1298 ntBASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms