Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 AC093323.1-202ENST00000635031 2045 ntBASIC21.39■■□□□ 1.01
HMGB4Q8WW32 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB4Q8WW32 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 AC007322.4-201ENST00000509611 723 ntBASIC21.38■■□□□ 1.01
HMGB4Q8WW32 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 AC016405.3-201ENST00000607710 860 ntBASIC21.38■■□□□ 1.01
HMGB4Q8WW32 AC008175.2-201ENST00000612840 297 ntBASIC21.38■■□□□ 1.01
HMGB4Q8WW32 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGB4Q8WW32 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 AC093787.1-201ENST00000450396 207 ntBASIC21.37■■□□□ 1.01
HMGB4Q8WW32 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 AC069236.1-201ENST00000604339 616 ntBASIC21.37■■□□□ 1.01
HMGB4Q8WW32 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 OR10C1-204ENST00000622521 1039 ntBASIC21.37■■□□□ 1.01
HMGB4Q8WW32 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGB4Q8WW32 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 AC137767.1-201ENST00000602918 1920 ntBASIC21.36■■□□□ 1.01
HMGB4Q8WW32 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.36■■□□□ 1.01
HMGB4Q8WW32 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB4Q8WW32 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB4Q8WW32 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 POU5F1P3-201ENST00000428824 1078 ntBASIC21.34■■□□□ 1.01
HMGB4Q8WW32 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB4Q8WW32 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB4Q8WW32 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGB4Q8WW32 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
HMGB4Q8WW32 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGB4Q8WW32 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB4Q8WW32 AC087742.1-201ENST00000575880 1738 ntBASIC21.32■■□□□ 1
HMGB4Q8WW32 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB4Q8WW32 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.32■■□□□ 1
HMGB4Q8WW32 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.32■■□□□ 1
HMGB4Q8WW32 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.32■■□□□ 1
HMGB4Q8WW32 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.32■■□□□ 1
HMGB4Q8WW32 BX276092.2-201ENST00000417668 665 ntBASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms