Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC6.52□□□□□ -1.37
SYNE1Q8NF91 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 PCDHAC2-203ENST00000615316 3011 ntBASIC6.51□□□□□ -1.37
SYNE1Q8NF91 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 OAS3-207ENST00000551007 998 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 DUX4L16-201ENST00000555130 1264 ntBASIC6.51□□□□□ -1.37
SYNE1Q8NF91 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 KRT87P-202ENST00000534226 1464 ntBASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 UBE2DNL-204ENST00000602536 740 ntBASIC6.51□□□□□ -1.37
SYNE1Q8NF91 MDK-213ENST00000617138 635 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AC069152.1-201ENST00000438030 544 ntBASIC6.51□□□□□ -1.37
SYNE1Q8NF91 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 CPT2-209ENST00000636935 803 ntTSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 TMEM191A-211ENST00000637163 1067 ntBASIC6.5□□□□□ -1.37
SYNE1Q8NF91 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ANOS2P-203ENST00000472227 1816 ntBASIC6.5□□□□□ -1.37
SYNE1Q8NF91 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms