Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC28.23■■■□□ 2.11
USHBP1Q8N6Y0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
USHBP1Q8N6Y0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC28.23■■■□□ 2.11
USHBP1Q8N6Y0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC28.23■■■□□ 2.11
USHBP1Q8N6Y0 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 AC007322.4-201ENST00000509611 723 ntBASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USHBP1Q8N6Y0 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
USHBP1Q8N6Y0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
USHBP1Q8N6Y0 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.11
USHBP1Q8N6Y0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
USHBP1Q8N6Y0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
USHBP1Q8N6Y0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 PPP1R14BP2-201ENST00000426284 444 ntBASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
USHBP1Q8N6Y0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 RNA5SP413-201ENST00000516373 109 ntBASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USHBP1Q8N6Y0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 FAM201B-201ENST00000458407 597 ntBASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 MIR4758-201ENST00000577688 71 ntBASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC28.18■■■□□ 2.1
USHBP1Q8N6Y0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USHBP1Q8N6Y0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 AC008687.6-201ENST00000596318 630 ntBASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC28.16■■■□□ 2.1
USHBP1Q8N6Y0 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms