Protein–RNA interactions for Protein: Q6IN85

PPP4R3A, Serine/threonine-protein phosphatase 4 regulatory subunit 3A, humanhuman

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3AQ6IN85 DUX4L1-201ENST00000627662 1275 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 DUX4L8-201ENST00000629013 1275 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 DUX4L3-201ENST00000630187 1275 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 DUX4L7-201ENST00000630678 1275 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 DUX4L5-201ENST00000630834 1275 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.2■■□□□ 1.46
PPP4R3AQ6IN85 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.19■■□□□ 1.46
PPP4R3AQ6IN85 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 AC010542.4-201ENST00000563151 1910 ntBASIC24.18■■□□□ 1.46
PPP4R3AQ6IN85 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 AC034268.1-201ENST00000441047 882 ntBASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 AC079140.4-201ENST00000507448 529 ntBASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R3AQ6IN85 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R3AQ6IN85 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R3AQ6IN85 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.14■■□□□ 1.46
PPP4R3AQ6IN85 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.14■■□□□ 1.45
PPP4R3AQ6IN85 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.14■■□□□ 1.45
PPP4R3AQ6IN85 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
PPP4R3AQ6IN85 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
PPP4R3AQ6IN85 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 KRT87P-202ENST00000534226 1464 ntBASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R3AQ6IN85 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 MIR5787-201ENST00000611784 55 ntBASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R3AQ6IN85 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.12■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms