Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AC016405.3-201ENST00000607710 860 ntBASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 SLC29A4P2-201ENST00000504749 1089 ntBASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13DQ5THJ4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 BX276092.2-201ENST00000417668 665 ntBASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 AL162412.1-201ENST00000567129 965 ntBASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 AL034346.1-201ENST00000568244 1277 ntBASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13DQ5THJ4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 AC026366.1-201ENST00000488803 879 ntBASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 UNC93B4-201ENST00000505679 747 ntBASIC14.46□□□□□ -0.09
VPS13DQ5THJ4 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
VPS13DQ5THJ4 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13DQ5THJ4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS13DQ5THJ4 AC137767.1-201ENST00000602918 1920 ntBASIC14.46□□□□□ -0.1
VPS13DQ5THJ4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 UNC93B5-201ENST00000530315 699 ntBASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13DQ5THJ4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 KRT16P2-201ENST00000414673 1423 ntBASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13DQ5THJ4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms