Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRIF1Q5T3J3 LINC01521-201ENST00000504184 1943 ntBASIC20.06■□□□□ 0.8
LRIF1Q5T3J3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRIF1Q5T3J3 AL157384.1-201ENST00000445995 2473 ntBASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 AC136469.2-201ENST00000623944 1028 ntBASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRIF1Q5T3J3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 SYT6-210ENST00000641643 1587 ntBASIC20.04■□□□□ 0.8
LRIF1Q5T3J3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 DUX4L19-201ENST00000557448 1267 ntBASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 AC011298.3-201ENST00000615796 283 ntBASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRIF1Q5T3J3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 SLC47A1P1-202ENST00000449666 945 ntBASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRIF1Q5T3J3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.02■□□□□ 0.79
LRIF1Q5T3J3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
LRIF1Q5T3J3 AP006587.3-201ENST00000525742 1516 ntBASIC20.02■□□□□ 0.79
LRIF1Q5T3J3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.02■□□□□ 0.79
LRIF1Q5T3J3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LRIF1Q5T3J3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LRIF1Q5T3J3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 SRR-208ENST00000576848 588 ntTSL 4 BASIC20■□□□□ 0.79
LRIF1Q5T3J3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
LRIF1Q5T3J3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRIF1Q5T3J3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRIF1Q5T3J3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms