Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDX1P47902 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDX1P47902 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.2■□□□□ 0.34
CDX1P47902 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CDX1P47902 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX1P47902 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX1P47902 AC126544.1-201ENST00000580842 1059 ntBASIC17.2■□□□□ 0.34
CDX1P47902 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.2■□□□□ 0.34
CDX1P47902 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX1P47902 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CDX1P47902 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 ANOS2P-203ENST00000472227 1816 ntBASIC17.19■□□□□ 0.34
CDX1P47902 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX1P47902 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX1P47902 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CDX1P47902 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 SLC47A1P1-202ENST00000449666 945 ntBASIC17.19■□□□□ 0.34
CDX1P47902 OR2I1P-207ENST00000453522 948 ntBASIC17.19■□□□□ 0.34
CDX1P47902 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CDX1P47902 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CDX1P47902 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX1P47902 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDX1P47902 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CDX1P47902 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.18■□□□□ 0.34
CDX1P47902 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX1P47902 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.18■□□□□ 0.34
CDX1P47902 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDX1P47902 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDX1P47902 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX1P47902 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX1P47902 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CDX1P47902 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.17■□□□□ 0.34
CDX1P47902 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.17■□□□□ 0.34
CDX1P47902 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDX1P47902 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX1P47902 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDX1P47902 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDX1P47902 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 AL353803.4-201ENST00000565882 1934 ntBASIC17.16■□□□□ 0.34
CDX1P47902 IRS3P-201ENST00000223076 1006 ntBASIC17.16■□□□□ 0.34
CDX1P47902 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms