Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC104564.3-201ENST00000582367 638 ntBASIC21.37■■□□□ 1.01
CCNFP41002 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.37■■□□□ 1.01
CCNFP41002 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.37■■□□□ 1.01
CCNFP41002 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNFP41002 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNFP41002 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNFP41002 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.36■■□□□ 1.01
CCNFP41002 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.36■■□□□ 1.01
CCNFP41002 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNFP41002 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.36■■□□□ 1.01
CCNFP41002 SLC47A1P1-202ENST00000449666 945 ntBASIC21.36■■□□□ 1.01
CCNFP41002 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.36■■□□□ 1.01
CCNFP41002 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCNFP41002 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.36■■□□□ 1.01
CCNFP41002 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNFP41002 OR7E47P-201ENST00000546390 1422 ntBASIC21.36■■□□□ 1.01
CCNFP41002 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNFP41002 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNFP41002 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.35■■□□□ 1.01
CCNFP41002 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
CCNFP41002 AC233992.3-201ENST00000607491 485 ntBASIC21.35■■□□□ 1.01
CCNFP41002 AL355001.2-201ENST00000620617 1191 ntBASIC21.35■■□□□ 1.01
CCNFP41002 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.35■■□□□ 1.01
CCNFP41002 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNFP41002 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.34■■□□□ 1.01
CCNFP41002 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.34■■□□□ 1.01
CCNFP41002 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.34■■□□□ 1.01
CCNFP41002 AC087239.1-201ENST00000622671 572 ntBASIC21.34■■□□□ 1.01
CCNFP41002 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.34■■□□□ 1.01
CCNFP41002 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNFP41002 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCNFP41002 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CCNFP41002 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCNFP41002 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
CCNFP41002 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.33■■□□□ 1.01
CCNFP41002 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCNFP41002 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCNFP41002 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CCNFP41002 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.33■■□□□ 1.01
CCNFP41002 AP005435.1-201ENST00000529293 1178 ntBASIC21.33■■□□□ 1.01
CCNFP41002 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCNFP41002 AC010525.1-201ENST00000585559 441 ntBASIC21.33■■□□□ 1.01
CCNFP41002 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.33■■□□□ 1.01
CCNFP41002 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CCNFP41002 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCNFP41002 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CCNFP41002 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCNFP41002 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.32■■□□□ 1
CCNFP41002 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCNFP41002 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CCNFP41002 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.32■■□□□ 1
CCNFP41002 AC027682.1-201ENST00000562846 899 ntBASIC21.32■■□□□ 1
CCNFP41002 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.32■■□□□ 1
CCNFP41002 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CCNFP41002 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.32■■□□□ 1
CCNFP41002 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.31■■□□□ 1
CCNFP41002 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.31■■□□□ 1
CCNFP41002 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CCNFP41002 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.31■■□□□ 1
CCNFP41002 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.31■■□□□ 1
CCNFP41002 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.31■■□□□ 1
CCNFP41002 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CCNFP41002 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.31■■□□□ 1
CCNFP41002 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.31■■□□□ 1
CCNFP41002 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCNFP41002 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCNFP41002 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCNFP41002 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms