Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CIITAP33076 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC24.07■■□□□ 1.44
CIITAP33076 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CIITAP33076 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CIITAP33076 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CIITAP33076 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
CIITAP33076 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 AC006015.1-201ENST00000429970 570 ntBASIC24.06■■□□□ 1.44
CIITAP33076 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24.06■■□□□ 1.44
CIITAP33076 AC010141.2-201ENST00000452426 721 ntBASIC24.06■■□□□ 1.44
CIITAP33076 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.06■■□□□ 1.44
CIITAP33076 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.06■■□□□ 1.44
CIITAP33076 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CIITAP33076 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.05■■□□□ 1.44
CIITAP33076 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.05■■□□□ 1.44
CIITAP33076 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.05■■□□□ 1.44
CIITAP33076 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC24.05■■□□□ 1.44
CIITAP33076 AP001160.3-201ENST00000601484 763 ntBASIC24.05■■□□□ 1.44
CIITAP33076 IKBKGP1-201ENST00000612193 1073 ntBASIC24.05■■□□□ 1.44
CIITAP33076 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.05■■□□□ 1.44
CIITAP33076 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
CIITAP33076 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
CIITAP33076 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CIITAP33076 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
CIITAP33076 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CIITAP33076 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CIITAP33076 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
CIITAP33076 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.04■■□□□ 1.44
CIITAP33076 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CIITAP33076 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.04■■□□□ 1.44
CIITAP33076 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.04■■□□□ 1.44
CIITAP33076 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CIITAP33076 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
CIITAP33076 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CIITAP33076 EP400NL-214ENST00000641289 2402 ntBASIC24.03■■□□□ 1.44
CIITAP33076 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CIITAP33076 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.03■■□□□ 1.44
CIITAP33076 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.03■■□□□ 1.44
CIITAP33076 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.03■■□□□ 1.44
CIITAP33076 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CIITAP33076 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
CIITAP33076 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.03■■□□□ 1.44
CIITAP33076 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.02■■□□□ 1.44
CIITAP33076 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC24.02■■□□□ 1.44
CIITAP33076 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CIITAP33076 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CIITAP33076 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 AC137761.2-201ENST00000561729 223 ntBASIC24.01■■□□□ 1.43
CIITAP33076 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.01■■□□□ 1.43
CIITAP33076 AC145350.3-201ENST00000569033 163 ntBASIC24.01■■□□□ 1.43
CIITAP33076 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CIITAP33076 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.01■■□□□ 1.43
CIITAP33076 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.01■■□□□ 1.43
CIITAP33076 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24■■□□□ 1.43
CIITAP33076 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24■■□□□ 1.43
CIITAP33076 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24■■□□□ 1.43
CIITAP33076 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24■■□□□ 1.43
CIITAP33076 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24■■□□□ 1.43
CIITAP33076 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24■■□□□ 1.43
CIITAP33076 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CIITAP33076 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
CIITAP33076 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CIITAP33076 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.99■■□□□ 1.43
CIITAP33076 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CIITAP33076 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CIITAP33076 KRT18P20-201ENST00000548986 1279 ntBASIC23.99■■□□□ 1.43
CIITAP33076 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.99■■□□□ 1.43
CIITAP33076 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.99■■□□□ 1.43
CIITAP33076 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CIITAP33076 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.99■■□□□ 1.43
CIITAP33076 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms