Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRMT1L-204ENST00000487028 619 ntTSL 211.19□□□□□ -0.629e-6■■■□□ 18.6
YBX3P16989 NEK6-215ENST00000546191 2580 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.729e-6■■■□□ 18.6
YBX3P16989 SP100-201ENST00000264052 3882 ntTSL 1 (best) BASIC10.27□□□□□ -0.769e-6■■■□□ 18.6
YBX3P16989 SERPINF1-209ENST00000573763 729 ntTSL 39.81□□□□□ -0.843e-10■■■□□ 18.6
YBX3P16989 NEK6-204ENST00000373603 3447 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.919e-6■■■□□ 18.6
YBX3P16989 PGM3-209ENST00000509219 753 ntTSL 57.95□□□□□ -1.149e-6■■■□□ 18.6
YBX3P16989 API5-204ENST00000526394 883 ntTSL 57.78□□□□□ -1.169e-6■■■□□ 18.6
YBX3P16989 API5-210ENST00000534600 1760 ntTSL 5 BASIC7.6□□□□□ -1.199e-6■■■□□ 18.6
YBX3P16989 GOLGA7-206ENST00000523128 509 ntTSL 26.2□□□□□ -1.429e-6■■■□□ 18.6
YBX3P16989 CLK3-212ENST00000563418 10498 ntTSL 36.04□□□□□ -1.449e-6■■■□□ 18.6
YBX3P16989 API5-209ENST00000532267 337 ntTSL 33.62□□□□□ -1.839e-6■■■□□ 18.6
YBX3P16989 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.59■■■□□ 2.333e-10■■■□□ 18.6
YBX3P16989 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.847e-6■■■□□ 18.6
YBX3P16989 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.77■■■□□ 2.847e-6■■■□□ 18.6
YBX3P16989 SURF1-202ENST00000437995 813 ntTSL 525.47■■□□□ 1.677e-6■■■□□ 18.6
YBX3P16989 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC10.01□□□□□ -0.812e-7■■■□□ 18.6
YBX3P16989 SURF1-204ENST00000495952 931 ntTSL 29.99□□□□□ -0.817e-6■■■□□ 18.6
YBX3P16989 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.89e-6■■■□□ 18.6
YBX3P16989 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.299e-6■■■□□ 18.6
YBX3P16989 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.199e-6■■■□□ 18.6
YBX3P16989 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.029e-6■■■□□ 18.6
YBX3P16989 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC27■■□□□ 1.919e-6■■■□□ 18.6
YBX3P16989 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.879e-6■■■□□ 18.6
YBX3P16989 ZW10-203ENST00000538209 892 ntTSL 326.43■■□□□ 1.829e-6■■■□□ 18.6
YBX3P16989 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.779e-6■■■□□ 18.6
YBX3P16989 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.669e-6■■■□□ 18.6
YBX3P16989 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.25■■□□□ 1.639e-6■■■□□ 18.6
YBX3P16989 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.06■■□□□ 1.69e-6■■■□□ 18.6
YBX3P16989 CDIPT-206ENST00000564296 1015 ntTSL 224.87■■□□□ 1.579e-6■■■□□ 18.6
YBX3P16989 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.38■■□□□ 1.499e-6■■■□□ 18.6
YBX3P16989 EHMT1-212ENST00000483653 437 ntTSL 223.97■■□□□ 1.439e-6■■■□□ 18.6
YBX3P16989 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.289e-6■■■□□ 18.6
YBX3P16989 TGIF1-221ENST00000552383 1267 ntTSL 222.61■■□□□ 1.219e-6■■■□□ 18.6
YBX3P16989 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22.34■■□□□ 1.179e-6■■■□□ 18.6
YBX3P16989 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.71■■□□□ 1.079e-6■■■□□ 18.6
YBX3P16989 MAP3K11-204ENST00000526293 571 ntTSL 420.57■□□□□ 0.889e-6■■■□□ 18.6
YBX3P16989 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.66■□□□□ 0.749e-6■■■□□ 18.6
YBX3P16989 PIGU-201ENST00000217446 1632 ntAPPRIS P2 TSL 1 (best)19.27■□□□□ 0.689e-6■■■□□ 18.6
YBX3P16989 CCND1-204ENST00000539241 920 ntTSL 219.08■□□□□ 0.649e-6■■■□□ 18.6
YBX3P16989 MAP3K11-207ENST00000529839 561 ntTSL 418.85■□□□□ 0.619e-6■■■□□ 18.6
YBX3P16989 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.71■□□□□ 0.599e-6■■■□□ 18.6
YBX3P16989 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.58■□□□□ 0.569e-6■■■□□ 18.6
YBX3P16989 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.539e-6■■■□□ 18.6
YBX3P16989 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.497e-6■■■□□ 18.6
YBX3P16989 EHMT1-214ENST00000488242 789 ntTSL 518.05■□□□□ 0.489e-6■■■□□ 18.6
YBX3P16989 EHMT1-248ENST00000637891 1930 ntTSL 517.4■□□□□ 0.389e-6■■■□□ 18.6
YBX3P16989 TRAPPC2L-203ENST00000562125 722 ntTSL 217.38■□□□□ 0.379e-6■■■□□ 18.6
YBX3P16989 TRAPPC2L-205ENST00000563514 419 ntTSL 217.38■□□□□ 0.379e-6■■■□□ 18.6
YBX3P16989 MAP3K11-206ENST00000527304 5605 nt17.34■□□□□ 0.379e-6■■■□□ 18.6
YBX3P16989 PEX5-214ENST00000541850 386 ntTSL 317.08■□□□□ 0.329e-6■■■□□ 18.6
YBX3P16989 CCND1-202ENST00000535993 568 ntTSL 216.55■□□□□ 0.249e-6■■■□□ 18.6
YBX3P16989 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.29e-6■■■□□ 18.6
YBX3P16989 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.66■□□□□ 0.19e-6■■■□□ 18.6
YBX3P16989 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.047e-6■■■□□ 18.6
YBX3P16989 SLC7A1-203ENST00000473577 726 ntTSL 515.26■□□□□ 0.039e-6■■■□□ 18.6
YBX3P16989 MAP3K11-203ENST00000524856 3787 ntTSL 215.25■□□□□ 0.039e-6■■■□□ 18.6
YBX3P16989 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.019e-6■■■□□ 18.6
YBX3P16989 ZWILCH-207ENST00000564179 582 ntTSL 514.82□□□□□ -0.049e-6■■■□□ 18.6
YBX3P16989 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC14.72□□□□□ -0.059e-6■■■□□ 18.6
YBX3P16989 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.089e-6■■■□□ 18.6
YBX3P16989 PLXNA1-202ENST00000503234 4446 ntTSL 214.47□□□□□ -0.099e-6■■■□□ 18.6
YBX3P16989 NCKAP1L-208ENST00000552211 597 ntTSL 514.46□□□□□ -0.099e-6■■■□□ 18.6
YBX3P16989 SRRT-211ENST00000478693 655 ntTSL 214.34□□□□□ -0.119e-6■■■□□ 18.6
YBX3P16989 ZW10-202ENST00000535142 2735 ntTSL 214.08□□□□□ -0.169e-6■■■□□ 18.6
YBX3P16989 PIGU-203ENST00000438215 509 ntTSL 313.56□□□□□ -0.249e-6■■■□□ 18.6
YBX3P16989 ZWILCH-210ENST00000565960 583 ntTSL 313.17□□□□□ -0.39e-6■■■□□ 18.6
YBX3P16989 ALDH4A1-202ENST00000375341 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.369e-6■■■□□ 18.6
YBX3P16989 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.49e-6■■■□□ 18.6
YBX3P16989 UNC5C-204ENST00000513796 2350 ntTSL 1 (best)12.15□□□□□ -0.469e-6■■■□□ 18.6
YBX3P16989 TGIF1-203ENST00000345133 1088 ntTSL 3 BASIC12.07□□□□□ -0.489e-6■■■□□ 18.6
YBX3P16989 CCND1-201ENST00000227507 4307 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.489e-6■■■□□ 18.6
YBX3P16989 AL080251.1-201ENST00000494072 4369 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.559e-6■■■□□ 18.6
YBX3P16989 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC11.18□□□□□ -0.629e-6■■■□□ 18.6
YBX3P16989 PEX5-202ENST00000266564 3170 ntTSL 1 (best) BASIC11.09□□□□□ -0.639e-6■■■□□ 18.6
YBX3P16989 DHDDS-208ENST00000431933 2673 ntTSL 510.49□□□□□ -0.739e-6■■■□□ 18.6
YBX3P16989 AP1G1-202ENST00000393512 3593 ntAPPRIS ALT1 TSL 5 BASIC10.48□□□□□ -0.739e-6■■■□□ 18.6
YBX3P16989 DHDDS-202ENST00000360009 3245 ntAPPRIS P4 TSL 2 BASIC10.12□□□□□ -0.799e-6■■■□□ 18.6
YBX3P16989 DHDDS-209ENST00000434391 3338 ntTSL 1 (best)9.91□□□□□ -0.829e-6■■■□□ 18.6
YBX3P16989 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.879e-6■■■□□ 18.6
YBX3P16989 NCKAP1L-205ENST00000548916 708 ntTSL 39.16□□□□□ -0.949e-6■■■□□ 18.6
YBX3P16989 ZNF280D-208ENST00000559352 428 ntTSL 58.57□□□□□ -1.047e-6■■■□□ 18.6
YBX3P16989 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC7.93□□□□□ -1.149e-6■■■□□ 18.6
YBX3P16989 TGIF1-215ENST00000549780 801 ntTSL 57.71□□□□□ -1.189e-6■■■□□ 18.6
YBX3P16989 SRRT-203ENST00000445337 446 ntTSL 37.56□□□□□ -1.29e-6■■■□□ 18.6
YBX3P16989 USP34-220ENST00000492882 348 ntTSL 27.3□□□□□ -1.249e-6■■■□□ 18.6
YBX3P16989 USP34-215ENST00000484179 927 ntTSL 37.26□□□□□ -1.259e-6■■■□□ 18.6
YBX3P16989 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.84□□□□□ -1.319e-6■■■□□ 18.6
YBX3P16989 AGFG1-207ENST00000458212 815 ntTSL 26.55□□□□□ -1.369e-6■■■□□ 18.6
YBX3P16989 TGIF1-214ENST00000549546 820 ntTSL 56.42□□□□□ -1.389e-6■■■□□ 18.6
YBX3P16989 AC107075.1-201ENST00000613695 314 ntBASIC6.06□□□□□ -1.449e-6■■■□□ 18.6
YBX3P16989 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.99□□□□□ -1.459e-6■■■□□ 18.6
YBX3P16989 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.81□□□□□ -1.489e-6■■■□□ 18.6
YBX3P16989 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.6□□□□□ -1.519e-6■■■□□ 18.6
YBX3P16989 USP34-211ENST00000472706 556 ntTSL 45.17□□□□□ -1.589e-6■■■□□ 18.6
YBX3P16989 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.597e-6■■■□□ 18.6
YBX3P16989 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.88□□□□□ -1.639e-6■■■□□ 18.6
YBX3P16989 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.74□□□□□ -1.659e-6■■■□□ 18.6
YBX3P16989 ZNF280D-202ENST00000558002 2274 ntTSL 1 (best)4.55□□□□□ -1.687e-6■■■□□ 18.6
YBX3P16989 USP34-205ENST00000453734 2708 ntTSL 1 (best)3.95□□□□□ -1.789e-6■■■□□ 18.6
YBX3P16989 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.25□□□□□ -1.897e-6■■■□□ 18.6
Retrieved 100 of 29,075 protein–RNA pairs in 350.1 ms