RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MYT1Q01538 1121 aa10.93□□□□□ -0.66
CLK3-212ENST00000563418 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
CLK3-212ENST00000563418 TTBK1Q5TCY1 1321 aaPredicted RBP10.2□□□□□ -0.78
CLK3-212ENST00000563418 CENPBP07199 599 aaPredicted RBP9.95□□□□□ -0.82
CLK3-212ENST00000563418 ZEB1P37275 1124 aaPredicted RBP9.9□□□□□ -0.82
CLK3-212ENST00000563418 ERICH6Q7L0X2 663 aa9.79□□□□□ -0.84
CLK3-212ENST00000563418 CCER1Q8TC90 406 aaPredicted RBP9.75□□□□□ -0.85
CLK3-212ENST00000563418 HRCP23327 699 aa9.74□□□□□ -0.85
CLK3-212ENST00000563418 PCGF6Q9BYE7 350 aa9.63□□□□□ -0.87
CLK3-212ENST00000563418 YTHDC1Q96MU7 727 aaKnown RBP9.53□□□□□ -0.88
CLK3-212ENST00000563418 NISCHQ9Y2I1 1504 aa9.49□□□□□ -0.89
CLK3-212ENST00000563418 SUPT5HO00267 1087 aaKnown RBP9.4□□□□□ -0.9
CLK3-212ENST00000563418 NEFLP07196 543 aa9.39□□□□□ -0.91
CLK3-212ENST00000563418 MYT1LQ9UL68 1186 aa9.35□□□□□ -0.91
CLK3-212ENST00000563418 TRIM26Q12899 539 aaPredicted RBP9.34□□□□□ -0.91
CLK3-212ENST00000563418 CLSPNQ9HAW4 1339 aa9.33□□□□□ -0.92
CLK3-212ENST00000563418 ACIN1Q9UKV3 1341 aaKnown RBP9.24□□□□□ -0.93
CLK3-212ENST00000563418 GTF3C3Q9Y5Q9 886 aa9.23□□□□□ -0.93
CLK3-212ENST00000563418 GLIPR1L2Q4G1C9 344 aa9.22□□□□□ -0.93
CLK3-212ENST00000563418 RTL5Q5HYW3 569 aaPredicted RBP9.22□□□□□ -0.93
CLK3-212ENST00000563418 PPARGC1BQ86YN6 1023 aaKnown RBP9.16□□□□□ -0.94
CLK3-212ENST00000563418 DIEXFQ68CQ4 756 aaKnown RBP9.13□□□□□ -0.95
CLK3-212ENST00000563418 SCAF1Q9H7N4 1312 aaKnown RBP9.1□□□□□ -0.95
CLK3-212ENST00000563418 BCL11AQ9H165 835 aa9.09□□□□□ -0.95
CLK3-212ENST00000563418 APLP2Q06481 763 aa9.07□□□□□ -0.96
CLK3-212ENST00000563418 ANP32EQ9BTT0 268 aa9.05□□□□□ -0.96
CLK3-212ENST00000563418 DAXXQ9UER7 740 aaPredicted RBP9.04□□□□□ -0.96
CLK3-212ENST00000563418 SHROOM4Q9ULL8 1493 aa9.03□□□□□ -0.96
CLK3-212ENST00000563418 DCAF1Q9Y4B6 1507 aa8.98□□□□□ -0.97
CLK3-212ENST00000563418 DCAF8L2P0C7V8 631 aa8.95□□□□□ -0.98
CLK3-212ENST00000563418 CDK11AQ9UQ88 783 aaPredicted RBP8.94□□□□□ -0.98
CLK3-212ENST00000563418 CCDC180Q9P1Z9 1646 aa8.93□□□□□ -0.98
CLK3-212ENST00000563418 EIF5BO60841 1220 aaKnown RBP8.89□□□□□ -0.99
CLK3-212ENST00000563418 NEUROD1Q13562 356 aa8.89□□□□□ -0.99
CLK3-212ENST00000563418 ZNF316A6NFI3 1004 aaPredicted RBP8.87□□□□□ -0.99
CLK3-212ENST00000563418 FAM9AQ8IZU1 332 aaPredicted RBP8.85□□□□□ -0.99
CLK3-212ENST00000563418 ANP32AP39687 249 aaKnown RBP8.84□□□□□ -0.99
CLK3-212ENST00000563418 RANGAP1P46060 587 aaPredicted RBP8.83□□□□□ -1
CLK3-212ENST00000563418 TRIM41Q8WV44 630 aa8.83□□□□□ -1
CLK3-212ENST00000563418 CHIC1Q5VXU3 224 aa8.82□□□□□ -1
CLK3-212ENST00000563418 ERICH6BQ5W0A0 696 aa8.82□□□□□ -1
CLK3-212ENST00000563418 SLC24A1O60721 1099 aa8.8□□□□□ -1
CLK3-212ENST00000563418 EHMT2Q96KQ7 1210 aa8.75□□□□□ -1.01
CLK3-212ENST00000563418 PRKCSHP14314 528 aaPredicted RBP8.75□□□□□ -1.01
CLK3-212ENST00000563418 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.72□□□□□ -1.01
CLK3-212ENST00000563418 BCANQ96GW7 911 aa8.7□□□□□ -1.02
CLK3-212ENST00000563418 NCLP19338 710 aaKnown RBP8.67□□□□□ -1.02
CLK3-212ENST00000563418 TNNT2P45379 298 aaPredicted RBP8.64□□□□□ -1.03
CLK3-212ENST00000563418 ZBTB47Q9UFB7 747 aaPredicted RBP8.63□□□□□ -1.03
CLK3-212ENST00000563418 LOC105371045A0A1W2PR82 267 aa8.62□□□□□ -1.03
CLK3-212ENST00000563418 FKBP8Q14318 412 aa8.62□□□□□ -1.03
CLK3-212ENST00000563418 ANP32BQ92688 251 aaKnown RBP8.62□□□□□ -1.03
CLK3-212ENST00000563418 ANP32CO43423 234 aa8.61□□□□□ -1.03
CLK3-212ENST00000563418 CSRNP3Q8WYN3 585 aa8.6□□□□□ -1.03
CLK3-212ENST00000563418 NBR1Q14596 966 aa8.59□□□□□ -1.03
CLK3-212ENST00000563418 DEKP35659 375 aaKnown RBP8.58□□□□□ -1.04
CLK3-212ENST00000563418 UBTFP17480 764 aaKnown RBP8.56□□□□□ -1.04
CLK3-212ENST00000563418 TRIM44Q96DX7 344 aaPredicted RBP8.56□□□□□ -1.04
CLK3-212ENST00000563418 PPM1GO15355 546 aaPredicted RBP8.55□□□□□ -1.04
CLK3-212ENST00000563418 SUPT16HQ9Y5B9 1047 aaKnown RBP8.54□□□□□ -1.04
CLK3-212ENST00000563418 RSPH6AQ9H0K4 717 aa8.54□□□□□ -1.04
CLK3-212ENST00000563418 NEFMP07197 916 aa8.54□□□□□ -1.04
CLK3-212ENST00000563418 DDRGK1Q96HY6 314 aa8.53□□□□□ -1.04
CLK3-212ENST00000563418 NOP58Q9Y2X3 529 aaKnown RBP8.53□□□□□ -1.04
CLK3-212ENST00000563418 CDK11BP21127 795 aaKnown RBP8.49□□□□□ -1.05
CLK3-212ENST00000563418 ZNF326Q5BKZ1 582 aaKnown RBP8.49□□□□□ -1.05
CLK3-212ENST00000563418 PKNOX2Q96KN3 472 aa8.48□□□□□ -1.05
CLK3-212ENST00000563418 HNRNPUL2Q1KMD3 747 aaKnown RBP8.47□□□□□ -1.05
CLK3-212ENST00000563418 RBM19Q9Y4C8 960 aaKnown RBP8.47□□□□□ -1.05
CLK3-212ENST00000563418 MIER1Q8N108 512 aa8.46□□□□□ -1.05
CLK3-212ENST00000563418 TSHZ2Q9NRE2 1034 aa8.45□□□□□ -1.06
CLK3-212ENST00000563418 HSP90AA1P07900 732 aaKnown RBP8.45□□□□□ -1.06
CLK3-212ENST00000563418 NAP1L5Q96NT1 182 aaPredicted RBP8.44□□□□□ -1.06
CLK3-212ENST00000563418 USP35Q9P2H5 1018 aa8.43□□□□□ -1.06
CLK3-212ENST00000563418 PODXL2Q9NZ53 605 aa8.43□□□□□ -1.06
CLK3-212ENST00000563418 NPM2Q86SE8 214 aaKnown RBP8.42□□□□□ -1.06
CLK3-212ENST00000563418 L1TD1Q5T7N2 865 aaKnown RBP8.41□□□□□ -1.06
CLK3-212ENST00000563418 UPF2Q9HAU5 1272 aaKnown RBP8.41□□□□□ -1.06
CLK3-212ENST00000563418 UBE2Q2Q8WVN8 375 aa8.41□□□□□ -1.06
CLK3-212ENST00000563418 RTN4Q9NQC3 1192 aaKnown RBP8.41□□□□□ -1.06
CLK3-212ENST00000563418 FANCIQ9NVI1 1328 aa8.4□□□□□ -1.07
CLK3-212ENST00000563418 CCDC136Q96JN2 1154 aa8.39□□□□□ -1.07
CLK3-212ENST00000563418 HSP90AA2PQ14568 343 aaPredicted RBP8.38□□□□□ -1.07
CLK3-212ENST00000563418 BECN1Q14457 450 aa8.37□□□□□ -1.07
CLK3-212ENST00000563418 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.36□□□□□ -1.07
CLK3-212ENST00000563418 MYO15BQ96JP2 1530 aa8.36□□□□□ -1.07
CLK3-212ENST00000563418 PPP4R2Q9NY27 417 aa8.36□□□□□ -1.07
CLK3-212ENST00000563418 HNRNPUQ00839 825 aaKnown RBP eCLIP8.34□□□□□ -1.07
CLK3-212ENST00000563418 ITGAEP38570 1179 aa8.33□□□□□ -1.08
CLK3-212ENST00000563418 CNGB1Q14028 1251 aaPredicted RBP8.33□□□□□ -1.08
CLK3-212ENST00000563418 VSIG10Q8N0Z9 540 aa8.33□□□□□ -1.08
CLK3-212ENST00000563418 PNNQ9H307 717 aaKnown RBP8.33□□□□□ -1.08
CLK3-212ENST00000563418 ARID4BQ4LE39 1312 aaPredicted RBP8.32□□□□□ -1.08
CLK3-212ENST00000563418 PTMSP20962 102 aa8.31□□□□□ -1.08
CLK3-212ENST00000563418 IPO9Q96P70 1041 aaKnown RBP8.27□□□□□ -1.09
CLK3-212ENST00000563418 GOLGA6L22H0YM25 854 aa8.26□□□□□ -1.09
CLK3-212ENST00000563418 TRIM52Q96A61 297 aa8.25□□□□□ -1.09
CLK3-212ENST00000563418 ANO8Q9HCE9 1232 aaPredicted RBP8.25□□□□□ -1.09
CLK3-212ENST00000563418 CCER2I3L3R5 266 aa8.24□□□□□ -1.09
CLK3-212ENST00000563418 MSNP26038 577 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms