Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS4BO75351 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4BO75351 OR7E47P-201ENST00000546390 1422 ntBASIC20.79■□□□□ 0.92
VPS4BO75351 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS4BO75351 AC133637.1-201ENST00000624115 1537 ntBASIC20.79■□□□□ 0.92
VPS4BO75351 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4BO75351 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4BO75351 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4BO75351 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS4BO75351 AC022517.1-201ENST00000592429 346 ntBASIC20.79■□□□□ 0.92
VPS4BO75351 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4BO75351 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS4BO75351 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4BO75351 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS4BO75351 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS4BO75351 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4BO75351 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS4BO75351 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4BO75351 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
VPS4BO75351 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4BO75351 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4BO75351 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS4BO75351 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS4BO75351 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.92
VPS4BO75351 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4BO75351 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS4BO75351 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.77■□□□□ 0.92
VPS4BO75351 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS4BO75351 IKBKGP1-201ENST00000612193 1073 ntBASIC20.77■□□□□ 0.92
VPS4BO75351 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.91
VPS4BO75351 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS4BO75351 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS4BO75351 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS4BO75351 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS4BO75351 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS4BO75351 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS4BO75351 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4BO75351 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS4BO75351 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
VPS4BO75351 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS4BO75351 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS4BO75351 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS4BO75351 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS4BO75351 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VPS4BO75351 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS4BO75351 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4BO75351 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4BO75351 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS4BO75351 FEM1AP4-201ENST00000443167 1987 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4BO75351 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4BO75351 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS4BO75351 SLC47A1P1-202ENST00000449666 945 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.74■□□□□ 0.91
VPS4BO75351 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS4BO75351 pRNA.6-201ENST00000610482 90 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 pRNA.5-201ENST00000612139 90 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 pRNA.11-201ENST00000618423 90 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 pRNA.13-201ENST00000619112 90 ntBASIC20.74■□□□□ 0.91
VPS4BO75351 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4BO75351 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4BO75351 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
VPS4BO75351 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS4BO75351 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.73■□□□□ 0.91
VPS4BO75351 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS4BO75351 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS4BO75351 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms