Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 AC018445.3-201ENST00000624177 1945 ntBASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 AC087289.5-201ENST00000586076 3175 ntBASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV1-1A0A0B4J248 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRAV1-1A0A0B4J248 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV1-1A0A0B4J248 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRAV1-1A0A0B4J248 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 AC019171.1-201ENST00000601251 1056 ntBASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV1-1A0A0B4J248 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 RPS2P35-201ENST00000443417 897 ntBASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV1-1A0A0B4J248 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 AL592293.1-201ENST00000502889 1188 ntBASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms