Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 LINC01006-201ENST00000333319 2292 ntBASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 AC004687.1-201ENST00000579003 1625 ntBASIC20.24■□□□□ 0.83
CCM2LQ9NUG4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCM2LQ9NUG4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 MIR5787-201ENST00000611784 55 ntBASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 AC135279.3-201ENST00000610945 1311 ntBASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.22■□□□□ 0.83
CCM2LQ9NUG4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCM2LQ9NUG4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.2■□□□□ 0.82
CCM2LQ9NUG4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 FEM1AP1-201ENST00000431297 1995 ntBASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2LQ9NUG4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms