Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.89■□□□□ 0.77
VCX3AQ9NNX9 Z98882.1-201ENST00000622160 2253 ntBASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCX3AQ9NNX9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCX3AQ9NNX9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.86■□□□□ 0.77
VCX3AQ9NNX9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 AFG3L1P-217ENST00000557444 2447 ntBASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.85■□□□□ 0.77
VCX3AQ9NNX9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 AC131274.2-201ENST00000580697 1507 ntBASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCX3AQ9NNX9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms