Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC026310.3-201ENST00000625186 2373 ntBASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 DUX4L19-201ENST00000557448 1267 ntBASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 AL138724.1-201ENST00000606771 1088 ntBASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 AC068587.7-201ENST00000641602 218 ntBASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
CLIP4Q8N3C7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CLIP4Q8N3C7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CLIP4Q8N3C7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP4Q8N3C7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 OR7E47P-201ENST00000546390 1422 ntBASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 AC136469.2-201ENST00000623944 1028 ntBASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP4Q8N3C7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 AL136116.3-201ENST00000402907 1138 ntBASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 AC010141.3-201ENST00000456659 717 ntBASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 AC011298.3-201ENST00000615796 283 ntBASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP4Q8N3C7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 AC026471.6-201ENST00000622954 1905 ntBASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms