Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 AC007322.4-201ENST00000509611 723 ntBASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 AC091874.3-201ENST00000512672 1195 ntBASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 AC010331.1-201ENST00000611423 582 ntBASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 DUSP8P3-201ENST00000399571 1760 ntBASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 BX276092.2-201ENST00000417668 665 ntBASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CSPG4Q6UVK1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 TERF1P5-201ENST00000477545 1207 ntBASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 MIPEPP3-201ENST00000412105 444 ntBASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 KRT18P20-201ENST00000548986 1279 ntBASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.66■□□□□ 0.42
CSPG4Q6UVK1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 AC026366.1-201ENST00000488803 879 ntBASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 UNC93B4-201ENST00000505679 747 ntBASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 OR10C1-204ENST00000622521 1039 ntBASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 AC211429.1-201ENST00000415277 523 ntBASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 LINC01960-201ENST00000563759 1884 ntBASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CSPG4Q6UVK1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
CSPG4Q6UVK1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 AC073912.3-201ENST00000624414 853 ntBASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.64■□□□□ 0.41
CSPG4Q6UVK1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms