Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MIR4758-201ENST00000577688 71 ntBASIC24.81■■□□□ 1.56
HMGCS2P54868 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGCS2P54868 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC24.81■■□□□ 1.56
HMGCS2P54868 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGCS2P54868 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGCS2P54868 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGCS2P54868 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.81■■□□□ 1.56
HMGCS2P54868 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGCS2P54868 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 AC137767.1-201ENST00000602918 1920 ntBASIC24.8■■□□□ 1.56
HMGCS2P54868 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.8■■□□□ 1.56
HMGCS2P54868 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.8■■□□□ 1.56
HMGCS2P54868 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC24.8■■□□□ 1.56
HMGCS2P54868 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24.8■■□□□ 1.56
HMGCS2P54868 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24.8■■□□□ 1.56
HMGCS2P54868 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC24.8■■□□□ 1.56
HMGCS2P54868 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
HMGCS2P54868 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
HMGCS2P54868 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.8■■□□□ 1.56
HMGCS2P54868 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.8■■□□□ 1.56
HMGCS2P54868 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
HMGCS2P54868 AC093787.1-201ENST00000450396 207 ntBASIC24.79■■□□□ 1.56
HMGCS2P54868 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC24.79■■□□□ 1.56
HMGCS2P54868 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
HMGCS2P54868 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
HMGCS2P54868 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.79■■□□□ 1.56
HMGCS2P54868 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.78■■□□□ 1.56
HMGCS2P54868 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
HMGCS2P54868 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC24.78■■□□□ 1.56
HMGCS2P54868 AC016405.3-201ENST00000607710 860 ntBASIC24.78■■□□□ 1.56
HMGCS2P54868 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 AC087742.1-201ENST00000575880 1738 ntBASIC24.78■■□□□ 1.56
HMGCS2P54868 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC24.78■■□□□ 1.56
HMGCS2P54868 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGCS2P54868 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
HMGCS2P54868 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.77■■□□□ 1.56
HMGCS2P54868 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC24.77■■□□□ 1.56
HMGCS2P54868 PPP1R14BP2-201ENST00000426284 444 ntBASIC24.77■■□□□ 1.56
HMGCS2P54868 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGCS2P54868 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC24.76■■□□□ 1.55
HMGCS2P54868 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.76■■□□□ 1.55
HMGCS2P54868 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC24.76■■□□□ 1.55
HMGCS2P54868 RNA5SP413-201ENST00000516373 109 ntBASIC24.76■■□□□ 1.55
HMGCS2P54868 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC24.76■■□□□ 1.55
HMGCS2P54868 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 OR10C1-204ENST00000622521 1039 ntBASIC24.76■■□□□ 1.55
HMGCS2P54868 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
HMGCS2P54868 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.76■■□□□ 1.55
HMGCS2P54868 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGCS2P54868 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.75■■□□□ 1.55
HMGCS2P54868 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.75■■□□□ 1.55
HMGCS2P54868 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
HMGCS2P54868 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGCS2P54868 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
HMGCS2P54868 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC24.75■■□□□ 1.55
HMGCS2P54868 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGCS2P54868 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGCS2P54868 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
HMGCS2P54868 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC24.74■■□□□ 1.55
HMGCS2P54868 AC008175.2-201ENST00000612840 297 ntBASIC24.74■■□□□ 1.55
HMGCS2P54868 AC008694.1-202ENST00000636953 945 ntBASIC24.74■■□□□ 1.55
HMGCS2P54868 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.74■■□□□ 1.55
HMGCS2P54868 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGCS2P54868 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
HMGCS2P54868 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGCS2P54868 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGCS2P54868 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
HMGCS2P54868 POU5F1P3-201ENST00000428824 1078 ntBASIC24.73■■□□□ 1.55
HMGCS2P54868 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGCS2P54868 RNF146-206ENST00000480444 843 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGCS2P54868 AC069236.1-201ENST00000604339 616 ntBASIC24.73■■□□□ 1.55
HMGCS2P54868 AC120498.10-201ENST00000621827 505 ntBASIC24.73■■□□□ 1.55
HMGCS2P54868 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms