Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.09■□□□□ 0.49
PDLIM4P50479 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM4P50479 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PDLIM4P50479 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PDLIM4P50479 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.08■□□□□ 0.49
PDLIM4P50479 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM4P50479 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.08■□□□□ 0.49
PDLIM4P50479 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM4P50479 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM4P50479 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM4P50479 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
PDLIM4P50479 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM4P50479 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.08■□□□□ 0.48
PDLIM4P50479 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.08■□□□□ 0.48
PDLIM4P50479 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM4P50479 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.08■□□□□ 0.48
PDLIM4P50479 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM4P50479 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PDLIM4P50479 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM4P50479 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.08■□□□□ 0.48
PDLIM4P50479 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM4P50479 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.07■□□□□ 0.48
PDLIM4P50479 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.07■□□□□ 0.48
PDLIM4P50479 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.07■□□□□ 0.48
PDLIM4P50479 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 CROCCP5-201ENST00000436658 830 ntBASIC18.07■□□□□ 0.48
PDLIM4P50479 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.07■□□□□ 0.48
PDLIM4P50479 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.07■□□□□ 0.48
PDLIM4P50479 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.07■□□□□ 0.48
PDLIM4P50479 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.07■□□□□ 0.48
PDLIM4P50479 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM4P50479 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.07■□□□□ 0.48
PDLIM4P50479 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PDLIM4P50479 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PDLIM4P50479 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM4P50479 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM4P50479 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM4P50479 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM4P50479 MIR663A-201ENST00000385250 93 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 AL034346.1-201ENST00000568244 1277 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 MFSD11-216ENST00000590393 1141 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 AC104771.1-201ENST00000603335 964 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 AL109923.1-201ENST00000618799 583 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
PDLIM4P50479 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM4P50479 OR7E47P-201ENST00000546390 1422 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 AP004607.7-201ENST00000527152 1677 ntBASIC18.06■□□□□ 0.48
PDLIM4P50479 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM4P50479 SLC25A24-204ENST00000569674 2357 ntBASIC18.05■□□□□ 0.48
PDLIM4P50479 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM4P50479 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.05■□□□□ 0.48
PDLIM4P50479 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM4P50479 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PDLIM4P50479 AP001160.3-201ENST00000601484 763 ntBASIC18.05■□□□□ 0.48
PDLIM4P50479 AC231657.2-201ENST00000624556 255 ntBASIC18.05■□□□□ 0.48
PDLIM4P50479 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM4P50479 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.04■□□□□ 0.48
PDLIM4P50479 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.04■□□□□ 0.48
PDLIM4P50479 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.04■□□□□ 0.48
PDLIM4P50479 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.04■□□□□ 0.48
PDLIM4P50479 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PDLIM4P50479 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PDLIM4P50479 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
PDLIM4P50479 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM4P50479 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.04■□□□□ 0.48
PDLIM4P50479 AC055733.4-201ENST00000638462 1354 ntBASIC18.04■□□□□ 0.48
PDLIM4P50479 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM4P50479 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 GPX1P1-201ENST00000388829 606 ntBASIC18.03■□□□□ 0.48
PDLIM4P50479 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
PDLIM4P50479 AL355802.2-201ENST00000402069 882 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms