Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.43■□□□□ 0.38
NKX2-1P43699 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
NKX2-1P43699 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
NKX2-1P43699 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.42■□□□□ 0.38
NKX2-1P43699 PVT1_1.1-201ENST00000615125 194 ntBASIC17.42■□□□□ 0.38
NKX2-1P43699 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.42■□□□□ 0.38
NKX2-1P43699 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
NKX2-1P43699 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX2-1P43699 OXCT2P1-201ENST00000447263 1535 ntBASIC17.42■□□□□ 0.38
NKX2-1P43699 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
NKX2-1P43699 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX2-1P43699 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX2-1P43699 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX2-1P43699 MIR6722-201ENST00000617286 78 ntBASIC17.41■□□□□ 0.38
NKX2-1P43699 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
NKX2-1P43699 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX2-1P43699 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX2-1P43699 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX2-1P43699 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.4■□□□□ 0.38
NKX2-1P43699 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.4■□□□□ 0.38
NKX2-1P43699 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX2-1P43699 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX2-1P43699 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NKX2-1P43699 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NKX2-1P43699 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.39■□□□□ 0.37
NKX2-1P43699 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
NKX2-1P43699 BEX3-202ENST00000372634 753 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX2-1P43699 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.39■□□□□ 0.37
NKX2-1P43699 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX2-1P43699 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX2-1P43699 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NKX2-1P43699 FEM1AP1-201ENST00000431297 1995 ntBASIC17.39■□□□□ 0.37
NKX2-1P43699 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.38■□□□□ 0.37
NKX2-1P43699 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 GUK1-208ENST00000366728 842 ntTSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 AC026471.6-201ENST00000622954 1905 ntBASIC17.38■□□□□ 0.37
NKX2-1P43699 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
NKX2-1P43699 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
NKX2-1P43699 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
NKX2-1P43699 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX2-1P43699 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms