Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXA3O43365 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXA3O43365 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.14■□□□□ 0.33
HOXA3O43365 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HOXA3O43365 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXA3O43365 AC010141.2-201ENST00000452426 721 ntBASIC17.14■□□□□ 0.33
HOXA3O43365 AC083906.2-201ENST00000511578 360 ntBASIC17.14■□□□□ 0.33
HOXA3O43365 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXA3O43365 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
HOXA3O43365 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXA3O43365 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
HOXA3O43365 AL050303.2-201ENST00000619798 666 ntBASIC17.14■□□□□ 0.33
HOXA3O43365 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.14■□□□□ 0.33
HOXA3O43365 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HOXA3O43365 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXA3O43365 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXA3O43365 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HOXA3O43365 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HOXA3O43365 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXA3O43365 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HOXA3O43365 AC138907.5-202ENST00000569484 235 ntBASIC17.13■□□□□ 0.33
HOXA3O43365 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXA3O43365 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXA3O43365 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXA3O43365 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.12■□□□□ 0.33
HOXA3O43365 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXA3O43365 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HOXA3O43365 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.12■□□□□ 0.33
HOXA3O43365 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HOXA3O43365 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.12■□□□□ 0.33
HOXA3O43365 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXA3O43365 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HOXA3O43365 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.12■□□□□ 0.33
HOXA3O43365 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.12■□□□□ 0.33
HOXA3O43365 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HOXA3O43365 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA3O43365 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXA3O43365 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXA3O43365 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA3O43365 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.11■□□□□ 0.33
HOXA3O43365 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXA3O43365 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA3O43365 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA3O43365 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA3O43365 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HOXA3O43365 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA3O43365 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA3O43365 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA3O43365 TSPY6P-201ENST00000448518 926 ntBASIC17.1■□□□□ 0.33
HOXA3O43365 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 KRT18P20-201ENST00000548986 1279 ntBASIC17.1■□□□□ 0.33
HOXA3O43365 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA3O43365 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA3O43365 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA3O43365 AP006587.3-201ENST00000525742 1516 ntBASIC17.1■□□□□ 0.33
HOXA3O43365 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA3O43365 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
HOXA3O43365 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HOXA3O43365 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA3O43365 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA3O43365 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 SLC29A4P1-201ENST00000398760 971 ntBASIC17.09■□□□□ 0.33
HOXA3O43365 AC010536.3-201ENST00000620306 533 ntBASIC17.09■□□□□ 0.33
HOXA3O43365 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA3O43365 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA3O43365 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA3O43365 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA3O43365 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms