Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.89■■□□□ 1.9
NPHP1O15259 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC26.89■■□□□ 1.9
NPHP1O15259 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC26.89■■□□□ 1.9
NPHP1O15259 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
NPHP1O15259 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
NPHP1O15259 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP1O15259 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP1O15259 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP1O15259 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP1O15259 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.89
NPHP1O15259 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.88■■□□□ 1.89
NPHP1O15259 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP1O15259 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC26.88■■□□□ 1.89
NPHP1O15259 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
NPHP1O15259 KRT18P29-201ENST00000397031 1267 ntBASIC26.88■■□□□ 1.89
NPHP1O15259 AC093827.2-201ENST00000512654 315 ntBASIC26.88■■□□□ 1.89
NPHP1O15259 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC26.88■■□□□ 1.89
NPHP1O15259 DET1-205ENST00000558413 583 ntTSL 4 BASIC26.88■■□□□ 1.89
NPHP1O15259 AL034346.1-201ENST00000568244 1277 ntBASIC26.88■■□□□ 1.89
NPHP1O15259 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
NPHP1O15259 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP1O15259 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
NPHP1O15259 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP1O15259 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP1O15259 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC26.88■■□□□ 1.89
NPHP1O15259 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP1O15259 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP1O15259 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC26.87■■□□□ 1.89
NPHP1O15259 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP1O15259 POU5F1P3-201ENST00000428824 1078 ntBASIC26.87■■□□□ 1.89
NPHP1O15259 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC26.87■■□□□ 1.89
NPHP1O15259 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.87■■□□□ 1.89
NPHP1O15259 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP1O15259 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP1O15259 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.86■■□□□ 1.89
NPHP1O15259 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.86■■□□□ 1.89
NPHP1O15259 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP1O15259 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP1O15259 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 NAA20-201ENST00000310450 920 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP1O15259 MIPEPP3-201ENST00000412105 444 ntBASIC26.85■■□□□ 1.89
NPHP1O15259 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP1O15259 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP1O15259 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.85■■□□□ 1.89
NPHP1O15259 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP1O15259 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
NPHP1O15259 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 AC068338.2-201ENST00000563278 1430 ntBASIC26.84■■□□□ 1.89
NPHP1O15259 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC26.84■■□□□ 1.89
NPHP1O15259 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 AC008687.6-201ENST00000596318 630 ntBASIC26.84■■□□□ 1.89
NPHP1O15259 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
NPHP1O15259 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.84■■□□□ 1.89
NPHP1O15259 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP1O15259 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC26.84■■□□□ 1.89
NPHP1O15259 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
NPHP1O15259 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.83■■□□□ 1.89
NPHP1O15259 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC26.83■■□□□ 1.89
NPHP1O15259 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC26.83■■□□□ 1.89
NPHP1O15259 AC069236.1-201ENST00000604339 616 ntBASIC26.83■■□□□ 1.89
NPHP1O15259 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.83■■□□□ 1.89
NPHP1O15259 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
NPHP1O15259 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP1O15259 LTK-203ENST00000453182 2412 ntTSL 2 BASIC26.82■■□□□ 1.88
NPHP1O15259 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC26.82■■□□□ 1.88
NPHP1O15259 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.82■■□□□ 1.88
NPHP1O15259 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.82■■□□□ 1.88
NPHP1O15259 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP1O15259 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP1O15259 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC26.82■■□□□ 1.88
NPHP1O15259 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC26.82■■□□□ 1.88
NPHP1O15259 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.82■■□□□ 1.88
NPHP1O15259 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC26.82■■□□□ 1.88
NPHP1O15259 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.82■■□□□ 1.88
NPHP1O15259 SLC7A5P1-201ENST00000568957 537 ntBASIC26.82■■□□□ 1.88
NPHP1O15259 AC120498.10-201ENST00000621827 505 ntBASIC26.82■■□□□ 1.88
NPHP1O15259 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP1O15259 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms