Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TRIM49D1C9J1S8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.36■■□□□ 1.01
TRIM49D1C9J1S8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM49D1C9J1S8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM49D1C9J1S8 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 KRT16P3-201ENST00000439127 1283 ntBASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 OR2I1P-207ENST00000453522 948 ntBASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.35■■□□□ 1.01
TRIM49D1C9J1S8 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 AC087239.1-201ENST00000622671 572 ntBASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM49D1C9J1S8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
TRIM49D1C9J1S8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.33■■□□□ 1
TRIM49D1C9J1S8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM49D1C9J1S8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.33■■□□□ 1
TRIM49D1C9J1S8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.33■■□□□ 1
TRIM49D1C9J1S8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 AC010141.3-201ENST00000456659 717 ntBASIC21.32■■□□□ 1
TRIM49D1C9J1S8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TRIM49D1C9J1S8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 AC010525.1-201ENST00000585559 441 ntBASIC21.31■■□□□ 1
TRIM49D1C9J1S8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM49D1C9J1S8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM49D1C9J1S8 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms