Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 MIR4767-201ENST00000582827 78 ntBASIC20.58■□□□□ 0.89
PCDHA9Q9Y5H5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA9Q9Y5H5 AC073130.3-201ENST00000624389 2278 ntBASIC20.58■□□□□ 0.88
PCDHA9Q9Y5H5 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA9Q9Y5H5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA9Q9Y5H5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 AC096631.2-201ENST00000436136 790 ntBASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA9Q9Y5H5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 AC135279.3-201ENST00000610945 1311 ntBASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA9Q9Y5H5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 AC079089.2-201ENST00000531211 1277 ntBASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 AC087239.1-201ENST00000622671 572 ntBASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 FEM1AP4-201ENST00000443167 1987 ntBASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHA9Q9Y5H5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 AC010141.3-201ENST00000456659 717 ntBASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 AP005435.1-201ENST00000529293 1178 ntBASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHA9Q9Y5H5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 BX842568.3-201ENST00000418104 571 ntBASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 PBX2P1-201ENST00000493219 1291 ntBASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 AF106564.1-201ENST00000607058 2553 ntBASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
PCDHA9Q9Y5H5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PCDHA9Q9Y5H5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHA9Q9Y5H5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms