Protein–RNA interactions for Protein: Q9NY59

SMPD3, Sphingomyelin phosphodiesterase 3, humanhuman

Predicted RBP Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3Q9NY59 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMPD3Q9NY59 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.8■□□□□ 0.76
SMPD3Q9NY59 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 SNX5-217ENST00000606557 1087 ntBASIC19.79■□□□□ 0.76
SMPD3Q9NY59 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.79■□□□□ 0.76
SMPD3Q9NY59 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMPD3Q9NY59 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 AC129492.7-201ENST00000622992 756 ntBASIC19.78■□□□□ 0.76
SMPD3Q9NY59 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMPD3Q9NY59 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 GABARAPL3-202ENST00000624044 1851 ntBASIC19.77■□□□□ 0.76
SMPD3Q9NY59 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 C17orf82-201ENST00000623772 1530 ntBASIC19.77■□□□□ 0.76
SMPD3Q9NY59 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 AL049796.1-201ENST00000565336 1766 ntBASIC19.77■□□□□ 0.76
SMPD3Q9NY59 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMPD3Q9NY59 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMPD3Q9NY59 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMPD3Q9NY59 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.75■□□□□ 0.75
SMPD3Q9NY59 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms