Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 AC004687.1-201ENST00000579003 1625 ntBASIC20.65■□□□□ 0.9
NDE1Q9NXR1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 AC104564.3-201ENST00000582367 638 ntBASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 OXCT2P1-201ENST00000447263 1535 ntBASIC20.64■□□□□ 0.9
NDE1Q9NXR1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 AC005703.6-201ENST00000623265 1329 ntBASIC20.64■□□□□ 0.89
NDE1Q9NXR1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.64■□□□□ 0.89
NDE1Q9NXR1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.61■□□□□ 0.89
NDE1Q9NXR1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 U85056.1-201ENST00000616429 682 ntBASIC20.61■□□□□ 0.89
NDE1Q9NXR1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms