Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 AC004687.1-201ENST00000579003 1625 ntBASIC20.65■□□□□ 0.9
NDE1Q9NXR1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 AC104564.3-201ENST00000582367 638 ntBASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NDE1Q9NXR1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.64■□□□□ 0.9
NDE1Q9NXR1 OXCT2P1-201ENST00000447263 1535 ntBASIC20.64■□□□□ 0.9
NDE1Q9NXR1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 AC005703.6-201ENST00000623265 1329 ntBASIC20.64■□□□□ 0.89
NDE1Q9NXR1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
NDE1Q9NXR1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.64■□□□□ 0.89
NDE1Q9NXR1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NDE1Q9NXR1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NDE1Q9NXR1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.61■□□□□ 0.89
NDE1Q9NXR1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 U85056.1-201ENST00000616429 682 ntBASIC20.61■□□□□ 0.89
NDE1Q9NXR1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NDE1Q9NXR1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NDE1Q9NXR1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms