Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CNTNAP3BQ96NU0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 KRT17P2-201ENST00000300992 1314 ntBASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTNAP3BQ96NU0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 DUSP8P4-201ENST00000399538 1761 ntBASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 TSPY7P-201ENST00000431358 1114 ntBASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CNTNAP3BQ96NU0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.87
CNTNAP3BQ96NU0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
CNTNAP3BQ96NU0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CNTNAP3BQ96NU0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CNTNAP3BQ96NU0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 AC069236.1-201ENST00000604339 616 ntBASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CNTNAP3BQ96NU0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CNTNAP3BQ96NU0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 TERF1P5-201ENST00000477545 1207 ntBASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.49■□□□□ 0.87
CNTNAP3BQ96NU0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 AC008403.3-201ENST00000598924 454 ntBASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.48■□□□□ 0.87
CNTNAP3BQ96NU0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.47■□□□□ 0.87
CNTNAP3BQ96NU0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.46■□□□□ 0.87
CNTNAP3BQ96NU0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms