Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD1Q96NR3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD1Q96NR3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.14■□□□□ 0.82
PTCHD1Q96NR3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.14■□□□□ 0.82
PTCHD1Q96NR3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTCHD1Q96NR3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 AL162430.1-201ENST00000480705 870 ntBASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD1Q96NR3 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 ECEL1P1-201ENST00000373592 1742 ntBASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD1Q96NR3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 AC242852.2-201ENST00000615738 1807 ntBASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 AC092053.2-201ENST00000640557 1818 ntBASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms