Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TTC28Q96AY4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TTC28Q96AY4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 AC068587.7-201ENST00000641602 218 ntBASIC22.15■■□□□ 1.14
TTC28Q96AY4 AC004687.1-201ENST00000579003 1625 ntBASIC22.15■■□□□ 1.14
TTC28Q96AY4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 NME3-204ENST00000563498 920 ntTSL 2 BASIC22.15■■□□□ 1.14
TTC28Q96AY4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.14■■□□□ 1.14
TTC28Q96AY4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TTC28Q96AY4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
TTC28Q96AY4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
TTC28Q96AY4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
TTC28Q96AY4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.14■■□□□ 1.13
TTC28Q96AY4 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.14■■□□□ 1.13
TTC28Q96AY4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.14■■□□□ 1.13
TTC28Q96AY4 NTF6B-201ENST00000591913 560 ntBASIC22.14■■□□□ 1.13
TTC28Q96AY4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.14■■□□□ 1.13
TTC28Q96AY4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
TTC28Q96AY4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TTC28Q96AY4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 AC092803.2-201ENST00000564287 1899 ntBASIC22.13■■□□□ 1.13
TTC28Q96AY4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TTC28Q96AY4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.13■■□□□ 1.13
TTC28Q96AY4 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TTC28Q96AY4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC22.12■■□□□ 1.13
TTC28Q96AY4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.12■■□□□ 1.13
TTC28Q96AY4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TTC28Q96AY4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TTC28Q96AY4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.12■■□□□ 1.13
TTC28Q96AY4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.12■■□□□ 1.13
TTC28Q96AY4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TTC28Q96AY4 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.12■■□□□ 1.13
TTC28Q96AY4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TTC28Q96AY4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TTC28Q96AY4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TTC28Q96AY4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TTC28Q96AY4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TTC28Q96AY4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
TTC28Q96AY4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TTC28Q96AY4 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.11■■□□□ 1.13
TTC28Q96AY4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.1■■□□□ 1.13
TTC28Q96AY4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.1■■□□□ 1.13
TTC28Q96AY4 UPK3BP1-201ENST00000428678 509 ntBASIC22.1■■□□□ 1.13
TTC28Q96AY4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TTC28Q96AY4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
TTC28Q96AY4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.1■■□□□ 1.13
TTC28Q96AY4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.1■■□□□ 1.13
TTC28Q96AY4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.09■■□□□ 1.13
TTC28Q96AY4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.09■■□□□ 1.13
TTC28Q96AY4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 AC010141.3-201ENST00000456659 717 ntBASIC22.09■■□□□ 1.13
TTC28Q96AY4 PNMA6B-201ENST00000538162 1200 ntBASIC22.09■■□□□ 1.13
TTC28Q96AY4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
TTC28Q96AY4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TTC28Q96AY4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TTC28Q96AY4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TTC28Q96AY4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TTC28Q96AY4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TTC28Q96AY4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TTC28Q96AY4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.08■■□□□ 1.13
TTC28Q96AY4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TTC28Q96AY4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TTC28Q96AY4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.08■■□□□ 1.12
TTC28Q96AY4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms