Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 SRD5A1P1-201ENST00000442297 786 ntBASIC19.2■□□□□ 0.66
PTP4A1Q93096 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTP4A1Q93096 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.2■□□□□ 0.66
PTP4A1Q93096 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PTP4A1Q93096 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTP4A1Q93096 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 AC104564.3-201ENST00000582367 638 ntBASIC19.18■□□□□ 0.66
PTP4A1Q93096 AC092171.4-201ENST00000609130 632 ntBASIC19.18■□□□□ 0.66
PTP4A1Q93096 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTP4A1Q93096 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTP4A1Q93096 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 AC131281.2-201ENST00000520478 145 ntBASIC19.17■□□□□ 0.66
PTP4A1Q93096 MIR4466-201ENST00000606121 54 ntBASIC19.17■□□□□ 0.66
PTP4A1Q93096 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.17■□□□□ 0.66
PTP4A1Q93096 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTP4A1Q93096 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 OR2I1P-207ENST00000453522 948 ntBASIC19.16■□□□□ 0.66
PTP4A1Q93096 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTP4A1Q93096 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.16■□□□□ 0.66
PTP4A1Q93096 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PTP4A1Q93096 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms