Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NKX2-3Q8TAU0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.48■■□□□ 1.67
NKX2-3Q8TAU0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NKX2-3Q8TAU0 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
NKX2-3Q8TAU0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NKX2-3Q8TAU0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 AL355802.2-201ENST00000402069 882 ntBASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX2-3Q8TAU0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 AC137761.2-201ENST00000561729 223 ntBASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 AC145350.3-201ENST00000569033 163 ntBASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 AL109923.1-201ENST00000618799 583 ntBASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25.46■■□□□ 1.67
NKX2-3Q8TAU0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NKX2-3Q8TAU0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 BX005040.4-201ENST00000637145 1518 ntBASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 OR7E47P-201ENST00000546390 1422 ntBASIC25.45■■□□□ 1.66
NKX2-3Q8TAU0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 MAP2K4P1-201ENST00000438453 1195 ntBASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 AC006970.2-201ENST00000450065 779 ntBASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.44■■□□□ 1.66
NKX2-3Q8TAU0 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 AL117328.2-201ENST00000624617 1940 ntBASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
NKX2-3Q8TAU0 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 ECEL1P1-201ENST00000373592 1742 ntBASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 AC242852.2-201ENST00000615738 1807 ntBASIC25.42■■□□□ 1.66
NKX2-3Q8TAU0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms