Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.294e-14■■■□□ 16.7
DDX55Q8NHQ9 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.474e-14■■■□□ 16.7
DDX55Q8NHQ9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.042e-6■■■□□ 16.7
DDX55Q8NHQ9 COL9A2-207ENST00000482722 2887 ntTSL 1 (best)14.89□□□□□ -0.032e-6■■■□□ 16.7
DDX55Q8NHQ9 MDK-209ENST00000489525 1339 ntTSL 529.18■■■□□ 2.267e-18■■■□□ 16.7
DDX55Q8NHQ9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.253e-10■■■□□ 16.7
DDX55Q8NHQ9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.257e-18■■■□□ 16.7
DDX55Q8NHQ9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC28.35■■■□□ 2.133e-10■■■□□ 16.7
DDX55Q8NHQ9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.82■■□□□ 1.723e-10■■■□□ 16.7
DDX55Q8NHQ9 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.79■■□□□ 1.723e-10■■■□□ 16.7
DDX55Q8NHQ9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC25.02■■□□□ 1.63e-10■■■□□ 16.7
DDX55Q8NHQ9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC23.46■■□□□ 1.353e-10■■■□□ 16.7
DDX55Q8NHQ9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.95■■□□□ 1.743e-12■■■□□ 16.7
DDX55Q8NHQ9 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.623e-7■■■□□ 16.7
DDX55Q8NHQ9 RHOC-213ENST00000473074 943 ntTSL 516.74■□□□□ 0.271e-14■■■□□ 16.7
DDX55Q8NHQ9 RHOC-205ENST00000369636 786 ntTSL 2 BASIC16.36■□□□□ 0.213e-7■■■□□ 16.7
DDX55Q8NHQ9 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.213e-7■■■□□ 16.7
DDX55Q8NHQ9 TNFRSF1A-205ENST00000534885 2069 ntTSL 1 (best)23.29■■□□□ 1.325e-7■■■□□ 16.6
DDX55Q8NHQ9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.165e-7■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-208ENST00000531189 577 ntTSL 223.96■■□□□ 1.431e-11■■■□□ 16.6
DDX55Q8NHQ9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.84■■□□□ 1.251e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-209ENST00000531418 585 ntTSL 321.83■■□□□ 1.091e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-207ENST00000529437 602 ntTSL 221.15■□□□□ 0.981e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.67■□□□□ 0.741e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-206ENST00000528425 608 ntTSL 419.2■□□□□ 0.661e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-205ENST00000466088 829 ntTSL 219.08■□□□□ 0.641e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-11■■■□□ 16.6
DDX55Q8NHQ9 AL133352.1-202ENST00000527595 1423 ntAPPRIS ALT2 TSL 217.65■□□□□ 0.421e-11■■■□□ 16.6
DDX55Q8NHQ9 AL133352.1-201ENST00000529568 1952 ntAPPRIS ALT2 TSL 216.07■□□□□ 0.161e-11■■■□□ 16.6
DDX55Q8NHQ9 NDUFB8-203ENST00000370322 713 ntTSL 2 BASIC14.82□□□□□ -0.041e-11■■■□□ 16.6
DDX55Q8NHQ9 AL133352.1-205ENST00000533549 582 ntAPPRIS ALT2 TSL 414.32□□□□□ -0.121e-11■■■□□ 16.6
DDX55Q8NHQ9 AL133352.1-204ENST00000528174 538 ntAPPRIS ALT2 TSL 311.61□□□□□ -0.551e-11■■■□□ 16.6
DDX55Q8NHQ9 MRPL52-209ENST00000553965 327 ntTSL 24.87□□□□□ -1.631e-23■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.22■■□□□ 1.474e-10■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.724e-10■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.68■□□□□ 0.584e-10■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-208ENST00000465244 4031 ntTSL 27.5□□□□□ -1.214e-10■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-206ENST00000425696 373 ntTSL 57.45□□□□□ -1.224e-10■■■□□ 16.6
DDX55Q8NHQ9 RBBP7-201ENST00000330735 858 ntTSL 25.71□□□□□ -1.54e-10■■■□□ 16.6
DDX55Q8NHQ9 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.365e-7■■■□□ 16.6
DDX55Q8NHQ9 GID8-201ENST00000266069 4397 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.739e-9■■■□□ 16.6
DDX55Q8NHQ9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 12e-7■■■□□ 16.6
DDX55Q8NHQ9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.21■■□□□ 1.475e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.745e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-226ENST00000551697 2260 ntTSL 517.57■□□□□ 0.45e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-211ENST00000547787 2132 ntTSL 217.35■□□□□ 0.375e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-206ENST00000546406 1041 ntTSL 216.7■□□□□ 0.265e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-223ENST00000550919 1077 ntTSL 315.56■□□□□ 0.085e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-228ENST00000553122 1218 ntTSL 315.42■□□□□ 0.065e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-202ENST00000380189 2998 ntTSL 1 (best)14.05□□□□□ -0.165e-22■■■□□ 16.6
DDX55Q8NHQ9 CERS5-224ENST00000551005 2700 ntTSL 210.65□□□□□ -0.75e-22■■■□□ 16.6
DDX55Q8NHQ9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.475e-7■■■□□ 16.6
DDX55Q8NHQ9 AXIN1-204ENST00000461023 6340 ntTSL 217.08■□□□□ 0.325e-7■■■□□ 16.6
DDX55Q8NHQ9 AXIN1-202ENST00000354866 3324 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.215e-7■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.079e-52■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.57■□□□□ 0.569e-52■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.089e-52■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-208ENST00000409718 2648 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.259e-52■■■□□ 16.6
DDX55Q8NHQ9 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.263e-26■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-205ENST00000409151 1979 ntTSL 2 BASIC13.43□□□□□ -0.269e-52■■■□□ 16.6
DDX55Q8NHQ9 YWHAB-202ENST00000372839 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.373e-26■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-206ENST00000409385 2320 ntTSL 2 BASIC11□□□□□ -0.659e-52■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC9.14□□□□□ -0.959e-52■■■□□ 16.6
DDX55Q8NHQ9 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.959e-52■■■□□ 16.6
DDX55Q8NHQ9 GPX3-208ENST00000521722 464 ntTSL 316.44■□□□□ 0.226e-16■■■□□ 16.6
DDX55Q8NHQ9 ATXN7L3B-201ENST00000519948 7604 ntAPPRIS P1 BASIC12.27□□□□□ -0.443e-12■■■□□ 16.6
DDX55Q8NHQ9 RPL41-201ENST00000358888 551 ntTSL 312.67□□□□□ -0.385e-25■■■□□ 16.6
DDX55Q8NHQ9 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.85e-25■■■□□ 16.6
DDX55Q8NHQ9 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.025e-25■■■□□ 16.6
DDX55Q8NHQ9 RPL41-203ENST00000546485 335 ntTSL 28.15□□□□□ -1.15e-25■■■□□ 16.6
DDX55Q8NHQ9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.593e-8■■■□□ 16.6
DDX55Q8NHQ9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.553e-8■■■□□ 16.6
DDX55Q8NHQ9 RARRES2-204ENST00000478771 1907 ntTSL 222.94■■□□□ 1.263e-8■■■□□ 16.6
DDX55Q8NHQ9 RARRES2-203ENST00000467793 583 ntTSL 320■□□□□ 0.793e-8■■■□□ 16.6
DDX55Q8NHQ9 RELN-201ENST00000343529 11565 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.63e-9■■■□□ 16.5
DDX55Q8NHQ9 RELN-202ENST00000424685 11571 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.63e-9■■■□□ 16.5
DDX55Q8NHQ9 RELN-203ENST00000428762 11571 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.63e-9■■■□□ 16.5
DDX55Q8NHQ9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.173e-13■■■□□ 16.5
DDX55Q8NHQ9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.873e-13■■■□□ 16.5
DDX55Q8NHQ9 SELENOH-203ENST00000533321 1454 ntTSL 1 (best)20.29■□□□□ 0.843e-13■■■□□ 16.5
DDX55Q8NHQ9 TMED9-204ENST00000507723 1018 ntTSL 218.04■□□□□ 0.489e-13■■■□□ 16.5
DDX55Q8NHQ9 MVD-209ENST00000565149 2352 ntTSL 1 (best)19.94■□□□□ 0.785e-16■■■□□ 16.5
DDX55Q8NHQ9 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.143e-17■■■□□ 16.5
DDX55Q8NHQ9 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.192e-14■■■□□ 16.5
DDX55Q8NHQ9 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.032e-14■■■□□ 16.5
DDX55Q8NHQ9 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.042e-14■■■□□ 16.5
DDX55Q8NHQ9 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.02□□□□□ -0.172e-14■■■□□ 16.5
DDX55Q8NHQ9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.333e-8■■■□□ 16.5
DDX55Q8NHQ9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.16■■■□□ 2.422e-6■■■□□ 16.5
DDX55Q8NHQ9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.767e-7■■■□□ 16.5
DDX55Q8NHQ9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.462e-11■■■□□ 16.5
DDX55Q8NHQ9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.865e-7■■■□□ 16.5
DDX55Q8NHQ9 SFT2D1-204ENST00000487841 2576 ntTSL 1 (best)13.72□□□□□ -0.215e-7■■■□□ 16.5
DDX55Q8NHQ9 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.221e-12■■■□□ 16.4
DDX55Q8NHQ9 ATP6AP1-209ENST00000491569 2079 ntTSL 223.5■■□□□ 1.352e-9■■■□□ 16.4
DDX55Q8NHQ9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.232e-9■■■□□ 16.4
DDX55Q8NHQ9 ATP6AP1-207ENST00000455205 4515 ntTSL 216.1■□□□□ 0.172e-9■■■□□ 16.4
DDX55Q8NHQ9 ATP6AP1-210ENST00000619046 2823 ntTSL 1 (best) BASIC12.86□□□□□ -0.352e-9■■■□□ 16.4
DDX55Q8NHQ9 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.252e-18■■■□□ 16.4
DDX55Q8NHQ9 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC15.24■□□□□ 0.032e-18■■■□□ 16.4
Retrieved 100 of 15,504 protein–RNA pairs in 85.6 ms