Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 AC098590.1-201ENST00000468126 897 ntBASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 EEF1DP3-203ENST00000566025 782 ntBASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 AC016405.3-201ENST00000607710 860 ntBASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 AP006294.2-201ENST00000641667 209 ntBASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.06■■□□□ 1.12
SLC44A3Q8N4M1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 RARRES2P4-201ENST00000514074 484 ntBASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 AC053503.5-201ENST00000601508 636 ntBASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 AC069236.1-201ENST00000604339 616 ntBASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC44A3Q8N4M1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 BX276092.2-201ENST00000417668 665 ntBASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 ADM-205ENST00000528544 586 ntTSL 2 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SLC44A3Q8N4M1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 ESRRAP1-201ENST00000400596 1257 ntBASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 AC083880.1-201ENST00000608266 535 ntBASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC44A3Q8N4M1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 GCSHP5-201ENST00000443090 522 ntBASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 AC097658.1-201ENST00000475555 843 ntBASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC44A3Q8N4M1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.02■■□□□ 1.11
SLC44A3Q8N4M1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 MYC-209ENST00000641252 345 ntBASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SLC44A3Q8N4M1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22■■□□□ 1.11
SLC44A3Q8N4M1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms