Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC58Q4VC31 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC58Q4VC31 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC58Q4VC31 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.04■□□□□ 0.64
CCDC58Q4VC31 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC58Q4VC31 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 BX664725.1-201ENST00000438252 379 ntBASIC19.03■□□□□ 0.64
CCDC58Q4VC31 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 AC012354.3-201ENST00000623734 483 ntBASIC19.03■□□□□ 0.64
CCDC58Q4VC31 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 C17orf82-201ENST00000623772 1530 ntBASIC19.03■□□□□ 0.64
CCDC58Q4VC31 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC58Q4VC31 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 AL499627.2-201ENST00000606283 725 ntBASIC19.02■□□□□ 0.64
CCDC58Q4VC31 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC58Q4VC31 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC58Q4VC31 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC58Q4VC31 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC58Q4VC31 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC58Q4VC31 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 KRT8P33-201ENST00000508125 1423 ntBASIC19.01■□□□□ 0.63
CCDC58Q4VC31 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 FEM1AP4-201ENST00000443167 1987 ntBASIC19.01■□□□□ 0.63
CCDC58Q4VC31 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC58Q4VC31 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19■□□□□ 0.63
CCDC58Q4VC31 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19■□□□□ 0.63
CCDC58Q4VC31 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19■□□□□ 0.63
CCDC58Q4VC31 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19■□□□□ 0.63
CCDC58Q4VC31 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC58Q4VC31 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19■□□□□ 0.63
CCDC58Q4VC31 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC58Q4VC31 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CCDC58Q4VC31 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms