Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL28A1Q2UY09 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 MIR4758-201ENST00000577688 71 ntBASIC20.52■□□□□ 0.88
COL28A1Q2UY09 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL28A1Q2UY09 ANOS2P-203ENST00000472227 1816 ntBASIC20.52■□□□□ 0.88
COL28A1Q2UY09 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL28A1Q2UY09 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.52■□□□□ 0.87
COL28A1Q2UY09 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL28A1Q2UY09 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL28A1Q2UY09 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.51■□□□□ 0.87
COL28A1Q2UY09 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 RARRES2P4-201ENST00000514074 484 ntBASIC20.5■□□□□ 0.87
COL28A1Q2UY09 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 AC142381.4-202ENST00000563973 229 ntBASIC20.5■□□□□ 0.87
COL28A1Q2UY09 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.5■□□□□ 0.87
COL28A1Q2UY09 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 UBE2DNL-204ENST00000602536 740 ntBASIC20.49■□□□□ 0.87
COL28A1Q2UY09 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.49■□□□□ 0.87
COL28A1Q2UY09 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 AC079630.1-202ENST00000618127 1840 ntBASIC20.48■□□□□ 0.87
COL28A1Q2UY09 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 AC133552.2-202ENST00000575694 574 ntBASIC20.48■□□□□ 0.87
COL28A1Q2UY09 AC010331.1-201ENST00000611423 582 ntBASIC20.48■□□□□ 0.87
COL28A1Q2UY09 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.48■□□□□ 0.87
COL28A1Q2UY09 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms