Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A1P20908 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A1P20908 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.74■□□□□ 0.91
COL5A1P20908 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.74■□□□□ 0.91
COL5A1P20908 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL5A1P20908 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.74■□□□□ 0.91
COL5A1P20908 AC083880.1-201ENST00000608266 535 ntBASIC20.74■□□□□ 0.91
COL5A1P20908 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL5A1P20908 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A1P20908 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A1P20908 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.74■□□□□ 0.91
COL5A1P20908 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A1P20908 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.74■□□□□ 0.91
COL5A1P20908 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A1P20908 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
COL5A1P20908 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A1P20908 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A1P20908 TERF1P5-201ENST00000477545 1207 ntBASIC20.73■□□□□ 0.91
COL5A1P20908 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
COL5A1P20908 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.73■□□□□ 0.91
COL5A1P20908 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 AC092118.2-201ENST00000613495 667 ntBASIC20.73■□□□□ 0.91
COL5A1P20908 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A1P20908 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.73■□□□□ 0.91
COL5A1P20908 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A1P20908 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A1P20908 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.72■□□□□ 0.91
COL5A1P20908 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A1P20908 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.72■□□□□ 0.91
COL5A1P20908 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.72■□□□□ 0.91
COL5A1P20908 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A1P20908 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.72■□□□□ 0.91
COL5A1P20908 AL512625.2-201ENST00000417533 625 ntBASIC20.72■□□□□ 0.91
COL5A1P20908 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.72■□□□□ 0.91
COL5A1P20908 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A1P20908 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.71■□□□□ 0.91
COL5A1P20908 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A1P20908 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.71■□□□□ 0.91
COL5A1P20908 AC098590.1-201ENST00000468126 897 ntBASIC20.71■□□□□ 0.91
COL5A1P20908 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A1P20908 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A1P20908 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A1P20908 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
COL5A1P20908 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.71■□□□□ 0.91
COL5A1P20908 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.71■□□□□ 0.91
COL5A1P20908 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 MIPEPP3-201ENST00000412105 444 ntBASIC20.71■□□□□ 0.91
COL5A1P20908 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.71■□□□□ 0.91
COL5A1P20908 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A1P20908 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.71■□□□□ 0.91
COL5A1P20908 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COL5A1P20908 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A1P20908 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A1P20908 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL5A1P20908 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.7■□□□□ 0.9
COL5A1P20908 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.7■□□□□ 0.9
COL5A1P20908 AC053503.5-201ENST00000601508 636 ntBASIC20.7■□□□□ 0.9
COL5A1P20908 MYC-209ENST00000641252 345 ntBASIC20.7■□□□□ 0.9
COL5A1P20908 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A1P20908 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL5A1P20908 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.7■□□□□ 0.9
COL5A1P20908 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
COL5A1P20908 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL5A1P20908 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL5A1P20908 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.69■□□□□ 0.9
COL5A1P20908 AC016405.3-201ENST00000607710 860 ntBASIC20.69■□□□□ 0.9
COL5A1P20908 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL5A1P20908 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL5A1P20908 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL5A1P20908 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
COL5A1P20908 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 RARRES2P4-201ENST00000514074 484 ntBASIC20.69■□□□□ 0.9
COL5A1P20908 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.69■□□□□ 0.9
COL5A1P20908 AC069236.1-201ENST00000604339 616 ntBASIC20.69■□□□□ 0.9
COL5A1P20908 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL5A1P20908 OR7E47P-201ENST00000546390 1422 ntBASIC20.68■□□□□ 0.9
COL5A1P20908 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL5A1P20908 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.68■□□□□ 0.9
COL5A1P20908 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A1P20908 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL5A1P20908 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.68■□□□□ 0.9
COL5A1P20908 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms