Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
CPSF4O95639 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CPSF4O95639 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4O95639 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CPSF4O95639 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4O95639 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CPSF4O95639 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4O95639 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.34■□□□□ 0.85
CPSF4O95639 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4O95639 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4O95639 AL356441.2-201ENST00000443009 864 ntBASIC20.34■□□□□ 0.85
CPSF4O95639 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.34■□□□□ 0.85
CPSF4O95639 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.33■□□□□ 0.85
CPSF4O95639 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.33■□□□□ 0.85
CPSF4O95639 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CPSF4O95639 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.33■□□□□ 0.85
CPSF4O95639 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4O95639 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
CPSF4O95639 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.33■□□□□ 0.84
CPSF4O95639 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.33■□□□□ 0.84
CPSF4O95639 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.33■□□□□ 0.84
CPSF4O95639 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4O95639 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4O95639 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CPSF4O95639 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4O95639 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 Z98882.1-201ENST00000622160 2253 ntBASIC20.32■□□□□ 0.84
CPSF4O95639 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4O95639 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4O95639 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 AC010141.3-201ENST00000456659 717 ntBASIC20.32■□□□□ 0.84
CPSF4O95639 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CPSF4O95639 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.32■□□□□ 0.84
CPSF4O95639 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CPSF4O95639 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4O95639 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4O95639 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4O95639 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4O95639 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4O95639 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4O95639 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.31■□□□□ 0.84
CPSF4O95639 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.31■□□□□ 0.84
CPSF4O95639 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4O95639 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.31■□□□□ 0.84
CPSF4O95639 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.31■□□□□ 0.84
CPSF4O95639 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CPSF4O95639 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 SYT6-210ENST00000641643 1587 ntBASIC20.3■□□□□ 0.84
CPSF4O95639 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
CPSF4O95639 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.3■□□□□ 0.84
CPSF4O95639 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4O95639 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CPSF4O95639 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CPSF4O95639 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.29■□□□□ 0.84
CPSF4O95639 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 SERBP1P1-201ENST00000396021 1160 ntBASIC20.29■□□□□ 0.84
CPSF4O95639 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.29■□□□□ 0.84
CPSF4O95639 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4O95639 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4O95639 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4O95639 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.29■□□□□ 0.84
CPSF4O95639 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CPSF4O95639 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CPSF4O95639 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.28■□□□□ 0.84
CPSF4O95639 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.28■□□□□ 0.84
CPSF4O95639 MIR4466-201ENST00000606121 54 ntBASIC20.28■□□□□ 0.84
CPSF4O95639 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.28■□□□□ 0.84
CPSF4O95639 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms