Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX3O95343 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.92■□□□□ 0.94
SIX3O95343 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.92■□□□□ 0.94
SIX3O95343 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX3O95343 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX3O95343 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.92■□□□□ 0.94
SIX3O95343 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX3O95343 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX3O95343 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.91■□□□□ 0.94
SIX3O95343 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX3O95343 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX3O95343 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX3O95343 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SIX3O95343 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX3O95343 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.9■□□□□ 0.94
SIX3O95343 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX3O95343 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.9■□□□□ 0.94
SIX3O95343 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX3O95343 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 FEM1AP4-201ENST00000443167 1987 ntBASIC20.9■□□□□ 0.94
SIX3O95343 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX3O95343 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.89■□□□□ 0.94
SIX3O95343 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.89■□□□□ 0.94
SIX3O95343 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX3O95343 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SIX3O95343 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.89■□□□□ 0.94
SIX3O95343 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX3O95343 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SIX3O95343 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 AP005435.1-201ENST00000529293 1178 ntBASIC20.89■□□□□ 0.93
SIX3O95343 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX3O95343 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.89■□□□□ 0.93
SIX3O95343 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
SIX3O95343 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SIX3O95343 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
SIX3O95343 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX3O95343 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
SIX3O95343 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX3O95343 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
SIX3O95343 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.88■□□□□ 0.93
SIX3O95343 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX3O95343 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.88■□□□□ 0.93
SIX3O95343 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SIX3O95343 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SIX3O95343 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX3O95343 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX3O95343 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.87■□□□□ 0.93
SIX3O95343 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SIX3O95343 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SIX3O95343 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX3O95343 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX3O95343 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 AP004607.7-201ENST00000527152 1677 ntBASIC20.86■□□□□ 0.93
SIX3O95343 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX3O95343 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SIX3O95343 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 AC104564.3-201ENST00000582367 638 ntBASIC20.86■□□□□ 0.93
SIX3O95343 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX3O95343 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX3O95343 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.86■□□□□ 0.93
SIX3O95343 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX3O95343 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX3O95343 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms