Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.48■□□□□ 0.87
CPNE3O75131 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 AC079089.2-201ENST00000531211 1277 ntBASIC20.48■□□□□ 0.87
CPNE3O75131 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.48■□□□□ 0.87
CPNE3O75131 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.48■□□□□ 0.87
CPNE3O75131 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.48■□□□□ 0.87
CPNE3O75131 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.48■□□□□ 0.87
CPNE3O75131 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE3O75131 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
CPNE3O75131 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.47■□□□□ 0.87
CPNE3O75131 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.47■□□□□ 0.87
CPNE3O75131 AC080038.1-201ENST00000611274 1154 ntBASIC20.47■□□□□ 0.87
CPNE3O75131 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.47■□□□□ 0.87
CPNE3O75131 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.47■□□□□ 0.87
CPNE3O75131 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE3O75131 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.46■□□□□ 0.87
CPNE3O75131 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE3O75131 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE3O75131 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.46■□□□□ 0.87
CPNE3O75131 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE3O75131 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE3O75131 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE3O75131 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CPNE3O75131 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE3O75131 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE3O75131 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE3O75131 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CPNE3O75131 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CPNE3O75131 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 KRT87P-202ENST00000534226 1464 ntBASIC20.45■□□□□ 0.86
CPNE3O75131 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 KRT18P11-201ENST00000435214 1283 ntBASIC20.45■□□□□ 0.86
CPNE3O75131 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.45■□□□□ 0.86
CPNE3O75131 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 BID-214ENST00000617586 542 ntTSL 5 BASIC20.45■□□□□ 0.86
CPNE3O75131 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CPNE3O75131 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE3O75131 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.45■□□□□ 0.86
CPNE3O75131 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CPNE3O75131 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE3O75131 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.44■□□□□ 0.86
CPNE3O75131 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.44■□□□□ 0.86
CPNE3O75131 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.43■□□□□ 0.86
CPNE3O75131 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CPNE3O75131 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.43■□□□□ 0.86
CPNE3O75131 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CPNE3O75131 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.43■□□□□ 0.86
CPNE3O75131 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPNE3O75131 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.43■□□□□ 0.86
CPNE3O75131 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.43■□□□□ 0.86
CPNE3O75131 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
CPNE3O75131 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CPNE3O75131 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CPNE3O75131 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPNE3O75131 ID1-201ENST00000376105 1233 ntBASIC20.42■□□□□ 0.86
CPNE3O75131 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.42■□□□□ 0.86
CPNE3O75131 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.42■□□□□ 0.86
CPNE3O75131 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPNE3O75131 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPNE3O75131 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPNE3O75131 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
CPNE3O75131 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPNE3O75131 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPNE3O75131 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.41■□□□□ 0.86
CPNE3O75131 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms