Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 AC137630.3-201ENST00000607245 391 ntBASIC18.31■□□□□ 0.52
XRCC3O43542 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
XRCC3O43542 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
XRCC3O43542 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
XRCC3O43542 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
XRCC3O43542 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC3O43542 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
XRCC3O43542 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC3O43542 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
XRCC3O43542 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.29■□□□□ 0.52
XRCC3O43542 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.29■□□□□ 0.52
XRCC3O43542 AC009102.2-201ENST00000606772 1639 ntBASIC18.29■□□□□ 0.52
XRCC3O43542 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC3O43542 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
XRCC3O43542 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.28■□□□□ 0.52
XRCC3O43542 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
XRCC3O43542 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.28■□□□□ 0.52
XRCC3O43542 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.28■□□□□ 0.52
XRCC3O43542 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.28■□□□□ 0.52
XRCC3O43542 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
XRCC3O43542 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
XRCC3O43542 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
XRCC3O43542 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
XRCC3O43542 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
XRCC3O43542 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.27■□□□□ 0.52
XRCC3O43542 AL049796.1-201ENST00000565336 1766 ntBASIC18.27■□□□□ 0.52
XRCC3O43542 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
XRCC3O43542 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
XRCC3O43542 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
XRCC3O43542 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.27■□□□□ 0.52
XRCC3O43542 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
XRCC3O43542 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.27■□□□□ 0.52
XRCC3O43542 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.27■□□□□ 0.52
XRCC3O43542 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.27■□□□□ 0.52
XRCC3O43542 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
XRCC3O43542 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.27■□□□□ 0.51
XRCC3O43542 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.27■□□□□ 0.51
XRCC3O43542 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.27■□□□□ 0.51
XRCC3O43542 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
XRCC3O43542 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
XRCC3O43542 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
XRCC3O43542 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.27■□□□□ 0.51
XRCC3O43542 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
XRCC3O43542 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
XRCC3O43542 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
XRCC3O43542 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 ATP5G2P3-201ENST00000429083 425 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms