Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.8■□□□□ 0.92
UBFD1O14562 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.8■□□□□ 0.92
UBFD1O14562 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.79■□□□□ 0.92
UBFD1O14562 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.79■□□□□ 0.92
UBFD1O14562 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
UBFD1O14562 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.79■□□□□ 0.92
UBFD1O14562 AC104564.3-201ENST00000582367 638 ntBASIC20.79■□□□□ 0.92
UBFD1O14562 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBFD1O14562 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
UBFD1O14562 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
UBFD1O14562 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.78■□□□□ 0.92
UBFD1O14562 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.78■□□□□ 0.92
UBFD1O14562 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
UBFD1O14562 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.78■□□□□ 0.92
UBFD1O14562 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.78■□□□□ 0.92
UBFD1O14562 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.78■□□□□ 0.92
UBFD1O14562 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.78■□□□□ 0.92
UBFD1O14562 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
UBFD1O14562 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBFD1O14562 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
UBFD1O14562 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
UBFD1O14562 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.77■□□□□ 0.92
UBFD1O14562 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.77■□□□□ 0.92
UBFD1O14562 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
UBFD1O14562 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.77■□□□□ 0.92
UBFD1O14562 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.77■□□□□ 0.92
UBFD1O14562 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
UBFD1O14562 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBFD1O14562 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
UBFD1O14562 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
UBFD1O14562 SYT6-210ENST00000641643 1587 ntBASIC20.76■□□□□ 0.91
UBFD1O14562 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.76■□□□□ 0.91
UBFD1O14562 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 SLC47A1P1-202ENST00000449666 945 ntBASIC20.76■□□□□ 0.91
UBFD1O14562 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.76■□□□□ 0.91
UBFD1O14562 AL138724.1-201ENST00000606771 1088 ntBASIC20.76■□□□□ 0.91
UBFD1O14562 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.76■□□□□ 0.91
UBFD1O14562 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBFD1O14562 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.75■□□□□ 0.91
UBFD1O14562 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
UBFD1O14562 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
UBFD1O14562 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 AC003102.1-202ENST00000563394 1796 ntBASIC20.75■□□□□ 0.91
UBFD1O14562 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.75■□□□□ 0.91
UBFD1O14562 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.75■□□□□ 0.91
UBFD1O14562 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
UBFD1O14562 AC136469.2-201ENST00000623944 1028 ntBASIC20.75■□□□□ 0.91
UBFD1O14562 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
UBFD1O14562 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBFD1O14562 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
UBFD1O14562 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBFD1O14562 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBFD1O14562 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.74■□□□□ 0.91
UBFD1O14562 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UBFD1O14562 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBFD1O14562 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms