Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 AP001160.3-201ENST00000601484 763 ntBASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMIM28A0A1B0GU29 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 KRT18P11-201ENST00000435214 1283 ntBASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 BID-214ENST00000617586 542 ntTSL 5 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
SMIM28A0A1B0GU29 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 AC092053.2-201ENST00000640557 1818 ntBASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMIM28A0A1B0GU29 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 EEF1DP3-203ENST00000566025 782 ntBASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMIM28A0A1B0GU29 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 CDCA4P2-201ENST00000441182 718 ntBASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 AC138907.5-202ENST00000569484 235 ntBASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 RAP2CP1-201ENST00000605103 478 ntBASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 AC073111.5-205ENST00000641717 521 ntBASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMIM28A0A1B0GU29 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 AC010141.2-201ENST00000452426 721 ntBASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 AC053503.5-201ENST00000601508 636 ntBASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 AC011767.1-201ENST00000617410 1153 ntBASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMIM28A0A1B0GU29 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMIM28A0A1B0GU29 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SMIM28A0A1B0GU29 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23■■□□□ 1.27
SMIM28A0A1B0GU29 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMIM28A0A1B0GU29 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SMIM28A0A1B0GU29 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms