Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 EHBP1L1-210ENST00000533465 793 ntTSL 320.89■□□□□ 0.939e-7■■■■■ 32.1
SF3B1O75533 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.13■□□□□ 0.819e-7■■■■■ 32.1
SF3B1O75533 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.739e-7■■■■■ 32.1
SF3B1O75533 UNC13D-212ENST00000589670 668 ntTSL 319.51■□□□□ 0.719e-7■■■■■ 32.1
SF3B1O75533 SEPT2-218ENST00000437066 574 ntTSL 419.31■□□□□ 0.689e-7■■■■■ 32.1
SF3B1O75533 SEPT2-213ENST00000428282 1005 ntTSL 319.25■□□□□ 0.679e-7■■■■■ 32.1
SF3B1O75533 SEPT2-242ENST00000492978 775 ntTSL 319.25■□□□□ 0.679e-7■■■■■ 32.1
SF3B1O75533 ATG13-225ENST00000579280 498 ntTSL 519.08■□□□□ 0.659e-7■■■■■ 32.1
SF3B1O75533 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.84■□□□□ 0.619e-7■■■■■ 32.1
SF3B1O75533 ARHGEF11-207ENST00000492592 864 ntTSL 318.57■□□□□ 0.569e-7■■■■■ 32.1
SF3B1O75533 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.35■□□□□ 0.539e-7■■■■■ 32.1
SF3B1O75533 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.23■□□□□ 0.519e-7■■■■■ 32.1
SF3B1O75533 UNC13D-206ENST00000586519 403 ntTSL 518.07■□□□□ 0.489e-7■■■■■ 32.1
SF3B1O75533 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.49e-7■■■■■ 32.1
SF3B1O75533 RPS16-203ENST00000595386 1035 ntTSL 217.13■□□□□ 0.339e-7■■■■■ 32.1
SF3B1O75533 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.11■□□□□ 0.339e-7■■■■■ 32.1
SF3B1O75533 ATG13-217ENST00000530942 552 ntTSL 416.97■□□□□ 0.319e-7■■■■■ 32.1
SF3B1O75533 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.159e-7■■■■■ 32.1
SF3B1O75533 MLXIP-202ENST00000366272 1682 ntTSL 315.04■□□□□ -09e-7■■■■■ 32.1
SF3B1O75533 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.039e-7■■■■■ 32.1
SF3B1O75533 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.079e-7■■■■■ 32.1
SF3B1O75533 MLXIP-210ENST00000541750 2835 ntTSL 514.53□□□□□ -0.089e-7■■■■■ 32.1
SF3B1O75533 TTI1-204ENST00000473288 545 ntTSL 514.36□□□□□ -0.119e-7■■■■■ 32.1
SF3B1O75533 PKMYT1-209ENST00000572658 551 ntTSL 214.1□□□□□ -0.159e-7■■■■■ 32.1
SF3B1O75533 ATG13-208ENST00000526715 578 ntTSL 413.67□□□□□ -0.229e-7■■■■■ 32.1
SF3B1O75533 USP14-208ENST00000582707 1803 ntTSL 5 BASIC13.61□□□□□ -0.239e-7■■■■■ 32.1
SF3B1O75533 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.289e-7■■■■■ 32.1
SF3B1O75533 HDAC7-226ENST00000547259 569 ntTSL 313□□□□□ -0.339e-7■■■■■ 32.1
SF3B1O75533 SEPT2-235ENST00000475823 371 ntTSL 312.54□□□□□ -0.49e-7■■■■■ 32.1
SF3B1O75533 USP14-202ENST00000383589 2168 ntTSL 5 BASIC12.43□□□□□ -0.429e-7■■■■■ 32.1
SF3B1O75533 ARHGEF2-212ENST00000474428 742 ntTSL 312.4□□□□□ -0.429e-7■■■■■ 32.1
SF3B1O75533 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.489e-7■■■■■ 32.1
SF3B1O75533 ARHGEF2-210ENST00000470975 638 ntTSL 212.03□□□□□ -0.489e-7■■■■■ 32.1
SF3B1O75533 USP14-203ENST00000400266 1681 ntTSL 2 BASIC11.95□□□□□ -0.59e-7■■■■■ 32.1
SF3B1O75533 SEPT2-224ENST00000457335 570 ntTSL 411.87□□□□□ -0.519e-7■■■■■ 32.1
SF3B1O75533 SEPT2-212ENST00000425899 738 ntTSL 511.64□□□□□ -0.559e-7■■■■■ 32.1
SF3B1O75533 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.559e-7■■■■■ 32.1
SF3B1O75533 RPS16-208ENST00000602153 444 ntTSL 211.25□□□□□ -0.619e-7■■■■■ 32.1
SF3B1O75533 USP14-205ENST00000578942 3189 ntTSL 211.1□□□□□ -0.639e-7■■■■■ 32.1
SF3B1O75533 SYVN1-207ENST00000526121 578 ntTSL 311.09□□□□□ -0.639e-7■■■■■ 32.1
SF3B1O75533 SEPT2-230ENST00000467971 571 ntTSL 210.95□□□□□ -0.669e-7■■■■■ 32.1
SF3B1O75533 SEPT2-214ENST00000428524 644 ntTSL 510.92□□□□□ -0.669e-7■■■■■ 32.1
SF3B1O75533 ARHGEF11-206ENST00000487682 4796 ntTSL 210.49□□□□□ -0.739e-7■■■■■ 32.1
SF3B1O75533 AKIRIN1-204ENST00000531822 718 ntTSL 510.28□□□□□ -0.769e-7■■■■■ 32.1
SF3B1O75533 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.799e-7■■■■■ 32.1
SF3B1O75533 HECTD1-211ENST00000555915 775 ntTSL 59.53□□□□□ -0.889e-7■■■■■ 32.1
SF3B1O75533 SEPT2-202ENST00000366210 672 ntTSL 39.21□□□□□ -0.949e-7■■■■■ 32.1
SF3B1O75533 SEPT2-219ENST00000441533 372 ntTSL 59.2□□□□□ -0.949e-7■■■■■ 32.1
SF3B1O75533 IPO9-204ENST00000479374 704 ntTSL 38.59□□□□□ -1.039e-7■■■■■ 32.1
SF3B1O75533 SEPT2-207ENST00000407017 650 ntTSL 48.54□□□□□ -1.049e-7■■■■■ 32.1
SF3B1O75533 SEPT2-221ENST00000445030 575 ntTSL 38.54□□□□□ -1.049e-7■■■■■ 32.1
SF3B1O75533 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.149e-7■■■■■ 32.1
SF3B1O75533 SPRED1-203ENST00000561317 527 ntTSL 47.27□□□□□ -1.259e-7■■■■■ 32.1
SF3B1O75533 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.269e-7■■■■■ 32.1
SF3B1O75533 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.39e-7■■■■■ 32.1
SF3B1O75533 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.5□□□□□ -1.379e-7■■■■■ 32.1
SF3B1O75533 SEPT2-241ENST00000484740 563 ntTSL 36.48□□□□□ -1.379e-7■■■■■ 32.1
SF3B1O75533 SEPT2-220ENST00000443492 558 ntTSL 56.16□□□□□ -1.429e-7■■■■■ 32.1
SF3B1O75533 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.429e-7■■■■■ 32.1
SF3B1O75533 SEPT2-222ENST00000449239 599 ntTSL 25.34□□□□□ -1.559e-7■■■■■ 32.1
SF3B1O75533 SEPT2-232ENST00000469434 583 ntTSL 34.64□□□□□ -1.679e-7■■■■■ 32.1
SF3B1O75533 SEPT2-228ENST00000464128 565 ntTSL 44.36□□□□□ -1.719e-7■■■■■ 32.1
SF3B1O75533 PSME4-203ENST00000461810 562 ntTSL 34.04□□□□□ -1.769e-7■■■■■ 32.1
SF3B1O75533 HECTD1-205ENST00000554027 556 ntTSL 23.68□□□□□ -1.829e-7■■■■■ 32.1
SF3B1O75533 SEPT2-233ENST00000473479 659 ntTSL 23.44□□□□□ -1.869e-7■■■■■ 32.1
SF3B1O75533 USP14-204ENST00000578786 1104 ntTSL 53.35□□□□□ -1.879e-7■■■■■ 32.1
SF3B1O75533 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.16□□□□□ -2.069e-7■■■■■ 32.1
SF3B1O75533 RABL6-206ENST00000436380 2547 ntAPPRIS ALT2 TSL 215.61■□□□□ 0.097e-7■■■■■ 32
SF3B1O75533 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.653e-6■■■■■ 32
SF3B1O75533 ALDOC-202ENST00000395319 1519 ntTSL 5 BASIC13.24□□□□□ -0.293e-6■■■■■ 32
SF3B1O75533 ALDOC-203ENST00000395321 1722 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.433e-6■■■■■ 32
SF3B1O75533 OPN3-205ENST00000478849 880 ntTSL 327■■□□□ 1.916e-7■■■■■ 32
SF3B1O75533 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.79■■□□□ 1.881e-13■■■■■ 32
SF3B1O75533 OPN3-204ENST00000469376 1961 ntTSL 1 (best)26.61■■□□□ 1.856e-7■■■■■ 32
SF3B1O75533 GGA1-212ENST00000439161 568 ntTSL 425.59■■□□□ 1.692e-6■■■■■ 32
SF3B1O75533 OPN3-206ENST00000490673 1816 ntTSL 1 (best)25.06■■□□□ 1.66e-7■■■■■ 32
SF3B1O75533 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.226e-7■■■■■ 32
SF3B1O75533 GGA1-214ENST00000449944 927 ntTSL 520.77■□□□□ 0.912e-6■■■■■ 32
SF3B1O75533 GGA1-215ENST00000453208 639 ntTSL 520.25■□□□□ 0.832e-6■■■■■ 32
SF3B1O75533 GGA1-207ENST00000411501 661 ntTSL 319.94■□□□□ 0.782e-6■■■■■ 32
SF3B1O75533 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.68■□□□□ 0.586e-7■■■■■ 32
SF3B1O75533 FASN-212ENST00000637525 141 ntTSL 516.64■□□□□ 0.254e-7■■■■■ 32
SF3B1O75533 GGA1-210ENST00000429218 566 ntTSL 516.27■□□□□ 0.22e-6■■■■■ 32
SF3B1O75533 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.14■□□□□ 0.171e-13■■■■■ 32
SF3B1O75533 RPL27A-203ENST00000525981 297 ntTSL 516.14■□□□□ 0.171e-13■■■■■ 32
SF3B1O75533 RPL27A-212ENST00000534599 651 ntTSL 514.29□□□□□ -0.121e-13■■■■■ 32
SF3B1O75533 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC13.24□□□□□ -0.296e-7■■■■■ 32
SF3B1O75533 HADHB-201ENST00000317799 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.366e-7■■■■■ 32
SF3B1O75533 HADHB-202ENST00000405867 1588 ntTSL 5 BASIC12.39□□□□□ -0.436e-7■■■■■ 32
SF3B1O75533 RPL27A-201ENST00000314138 4916 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.441e-13■■■■■ 32
SF3B1O75533 RPL27A-208ENST00000530913 805 ntTSL 2 BASIC11.8□□□□□ -0.521e-13■■■■■ 32
SF3B1O75533 RPL27A-204ENST00000526562 519 ntTSL 2 BASIC11.09□□□□□ -0.631e-13■■■■■ 32
SF3B1O75533 GLG1-211ENST00000566601 2536 ntTSL 29.84□□□□□ -0.836e-7■■■■■ 32
SF3B1O75533 OPN3-203ENST00000463155 806 ntTSL 37.98□□□□□ -1.136e-7■■■■■ 32
SF3B1O75533 HADHB-207ENST00000494615 2883 ntTSL 27.95□□□□□ -1.146e-7■■■■■ 32
SF3B1O75533 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC7.33□□□□□ -1.241e-13■■■■■ 32
SF3B1O75533 TAF1-217ENST00000483985 836 ntTSL 37.17□□□□□ -1.262e-6■■■■■ 32
SF3B1O75533 PCM1-216ENST00000522777 682 ntTSL 36.24□□□□□ -1.416e-7■■■■■ 32
SF3B1O75533 PCM1-217ENST00000522998 493 ntTSL 31.59□□□□□ -2.166e-7■■■■■ 32
SF3B1O75533 SELENOI-203ENST00000447170 624 ntTSL 513.09□□□□□ -0.312e-6■■■■■ 32
Retrieved 100 of 46,956 protein–RNA pairs in 3369.3 ms