RNA–Protein interactions for RNA: ENST00000522777.1

PCM1-216, Transcript of pericentriolar material 1, humanhuman

TSL 3

Gene PCM1, Length 682 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-216ENST00000522777 AEBP2Q6ZN18 517 aaPredicted RBP26.4■■□□□ 1.82
PCM1-216ENST00000522777 CHIC1Q5VXU3 224 aa26.3■■□□□ 1.8
PCM1-216ENST00000522777 PHF23Q9BUL5 403 aaPredicted RBP23.23■■□□□ 1.31
PCM1-216ENST00000522777 SENP3Q9H4L4 574 aaPredicted RBP22.22■■□□□ 1.15
PCM1-216ENST00000522777 PLPPR3Q6T4P5 718 aa21.56■■□□□ 1.04
PCM1-216ENST00000522777 FOXD1Q16676 465 aa20.6■□□□□ 0.89
PCM1-216ENST00000522777 PPP6R1Q9UPN7 881 aa20.29■□□□□ 0.84
PCM1-216ENST00000522777 ADRA2BP18089 450 aa20.28■□□□□ 0.84
PCM1-216ENST00000522777 PIAS4Q8N2W9 510 aaPredicted RBP19.53■□□□□ 0.72
PCM1-216ENST00000522777 KCNA4P22459 653 aa19.34■□□□□ 0.69
PCM1-216ENST00000522777 PPP4R3CPQ6ZMV5 832 aa19.09■□□□□ 0.65
PCM1-216ENST00000522777 MSH5O43196 834 aa18.71■□□□□ 0.59
PCM1-216ENST00000522777 NCBP3Q53F19 620 aaKnown RBP18.69■□□□□ 0.58
PCM1-216ENST00000522777 EHMT2Q96KQ7 1210 aa18.59■□□□□ 0.57
PCM1-216ENST00000522777 NPM3O75607 178 aaKnown RBP18.51■□□□□ 0.55
PCM1-216ENST00000522777 SLC4A1APQ9BWU0 796 aaKnown RBP18.46■□□□□ 0.55
PCM1-216ENST00000522777 SCAF1Q9H7N4 1312 aaKnown RBP18.45■□□□□ 0.54
PCM1-216ENST00000522777 CNKSR2Q8WXI2 1034 aa18.41■□□□□ 0.54
PCM1-216ENST00000522777 MAPK8IP2Q13387 824 aaPredicted RBP18.22■□□□□ 0.51
PCM1-216ENST00000522777 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
PCM1-216ENST00000522777 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
PCM1-216ENST00000522777 RNF216Q9NWF9 866 aaPredicted RBP17.93■□□□□ 0.46
PCM1-216ENST00000522777 DMRT2Q9Y5R5 561 aa17.87■□□□□ 0.45
PCM1-216ENST00000522777 ZBTB22O15209 634 aa17.86■□□□□ 0.45
PCM1-216ENST00000522777 HOXD11P31277 338 aaPredicted RBP17.74■□□□□ 0.43
PCM1-216ENST00000522777 FOXD4L1Q9NU39 408 aa17.6■□□□□ 0.41
PCM1-216ENST00000522777 SLC4A2P04920 1241 aa17.37■□□□□ 0.37
PCM1-216ENST00000522777 MYCNP04198 464 aaPredicted RBP17.06■□□□□ 0.32
PCM1-216ENST00000522777 DCAF8L1A6NGE4 600 aa16.95■□□□□ 0.3
PCM1-216ENST00000522777 ATXN8OSP0DMR3 200 aa16.93■□□□□ 0.3
PCM1-216ENST00000522777 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.28
PCM1-216ENST00000522777 U3KPZ7 1027 aaPredicted RBP16.7■□□□□ 0.26
PCM1-216ENST00000522777 ATF5Q9Y2D1 282 aaPredicted RBP16.62■□□□□ 0.25
PCM1-216ENST00000522777 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
PCM1-216ENST00000522777 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
PCM1-216ENST00000522777 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
PCM1-216ENST00000522777 FKBP8Q14318 412 aa16.34■□□□□ 0.21
PCM1-216ENST00000522777 APLP2Q06481 763 aa16.25■□□□□ 0.19
PCM1-216ENST00000522777 ZNF219Q9P2Y4 722 aaPredicted RBP16.23■□□□□ 0.19
PCM1-216ENST00000522777 RNF39Q9H2S5 420 aa16.15■□□□□ 0.18
PCM1-216ENST00000522777 POTEDQ86YR6 584 aa16.08■□□□□ 0.16
PCM1-216ENST00000522777 SPINK5Q9NQ38 1064 aaPredicted RBP16.05■□□□□ 0.16
PCM1-216ENST00000522777 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
PCM1-216ENST00000522777 MKRN4PQ13434 485 aaPredicted RBP15.94■□□□□ 0.14
PCM1-216ENST00000522777 C1QBPQ07021 282 aaKnown RBP15.93■□□□□ 0.14
PCM1-216ENST00000522777 RTN4Q9NQC3 1192 aaKnown RBP15.92■□□□□ 0.14
PCM1-216ENST00000522777 AMER1Q5JTC6 1135 aaPredicted RBP15.89■□□□□ 0.13
PCM1-216ENST00000522777 CAPN15O75808 1086 aa15.88■□□□□ 0.13
PCM1-216ENST00000522777 POLA2Q14181 598 aa15.84■□□□□ 0.13
PCM1-216ENST00000522777 SPDYE4A6NLX3 237 aa15.77■□□□□ 0.12
PCM1-216ENST00000522777 FBLN2P98095 1184 aa15.77■□□□□ 0.12
PCM1-216ENST00000522777 PROM2Q8N271 834 aa15.7■□□□□ 0.1
PCM1-216ENST00000522777 ABCB7O75027 752 aa15.67■□□□□ 0.1
PCM1-216ENST00000522777 ZBTB12Q9Y330 459 aaPredicted RBP15.6■□□□□ 0.09
PCM1-216ENST00000522777 FBXO3Q9UK99 471 aa15.56■□□□□ 0.08
PCM1-216ENST00000522777 DSG3P32926 999 aa15.55■□□□□ 0.08
PCM1-216ENST00000522777 VASPP50552 380 aaPredicted RBP15.4■□□□□ 0.06
PCM1-216ENST00000522777 OSCARQ8IYS5 282 aa15.32■□□□□ 0.04
PCM1-216ENST00000522777 SLC24A1O60721 1099 aa15.27■□□□□ 0.04
PCM1-216ENST00000522777 SPDYE2BA6NHP3 402 aa15.26■□□□□ 0.03
PCM1-216ENST00000522777 SPDYE6P0CI01 402 aa15.26■□□□□ 0.03
PCM1-216ENST00000522777 SPDYE2Q495Y8 402 aa15.26■□□□□ 0.03
PCM1-216ENST00000522777 SSUH2Q9Y2M2 353 aa15.26■□□□□ 0.03
PCM1-216ENST00000522777 IFNLR1Q8IU57 520 aaPredicted RBP15.25■□□□□ 0.03
PCM1-216ENST00000522777 ZNF692Q9BU19 519 aaPredicted RBP15.25■□□□□ 0.03
PCM1-216ENST00000522777 CACNB1Q02641 598 aaPredicted RBP15.22■□□□□ 0.03
PCM1-216ENST00000522777 PABPN1Q86U42 306 aaKnown RBP eCLIP15.1■□□□□ 0.01
PCM1-216ENST00000522777 STAG3Q9UJ98 1225 aa15.04■□□□□ -0
PCM1-216ENST00000522777 PKD2Q13563 968 aa14.97□□□□□ -0.01
PCM1-216ENST00000522777 SPOCK2Q92563 424 aa14.92□□□□□ -0.02
PCM1-216ENST00000522777 KLHL34Q8N239 644 aa14.9□□□□□ -0.02
PCM1-216ENST00000522777 PLCD3Q8N3E9 789 aa14.88□□□□□ -0.03
PCM1-216ENST00000522777 MIER1Q8N108 512 aa14.84□□□□□ -0.03
PCM1-216ENST00000522777 RBM42Q9BTD8 480 aaKnown RBP14.73□□□□□ -0.05
PCM1-216ENST00000522777 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
PCM1-216ENST00000522777 ECM2O94769 699 aaPredicted RBP14.71□□□□□ -0.05
PCM1-216ENST00000522777 AKT1S1Q96B36 256 aa14.71□□□□□ -0.05
PCM1-216ENST00000522777 PLCB2Q00722 1185 aa14.7□□□□□ -0.06
PCM1-216ENST00000522777 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
PCM1-216ENST00000522777 PLEKHG5O94827 1062 aa14.67□□□□□ -0.06
PCM1-216ENST00000522777 SPDYE1Q8NFV5 336 aaPredicted RBP14.65□□□□□ -0.06
PCM1-216ENST00000522777 RGL2O15211 777 aa14.6□□□□□ -0.07
PCM1-216ENST00000522777 REM2Q8IYK8 340 aaPredicted RBP14.58□□□□□ -0.08
PCM1-216ENST00000522777 CIZ1Q9ULV3 898 aaPredicted RBP14.55□□□□□ -0.08
PCM1-216ENST00000522777 NPM1P06748 294 aaKnown RBP eCLIP14.54□□□□□ -0.08
PCM1-216ENST00000522777 CREBZFQ9NS37 354 aa14.52□□□□□ -0.09
PCM1-216ENST00000522777 CLEC11AQ9Y240 323 aa14.52□□□□□ -0.09
PCM1-216ENST00000522777 NUBP1P53384 320 aa14.51□□□□□ -0.09
PCM1-216ENST00000522777 MNX1P50219 401 aaPredicted RBP14.48□□□□□ -0.09
PCM1-216ENST00000522777 PRR29P0C7W0 189 aa14.47□□□□□ -0.09
PCM1-216ENST00000522777 BBXQ8WY36 941 aaPredicted RBP14.47□□□□□ -0.09
PCM1-216ENST00000522777 TRIM41Q8WV44 630 aa14.46□□□□□ -0.09
PCM1-216ENST00000522777 HAP1P54257 671 aaPredicted RBP14.44□□□□□ -0.1
PCM1-216ENST00000522777 PITPNM1O00562 1244 aa14.43□□□□□ -0.1
PCM1-216ENST00000522777 GSE1Q14687 1217 aa14.42□□□□□ -0.1
PCM1-216ENST00000522777 RNF25Q96BH1 459 aaPredicted RBP14.38□□□□□ -0.11
PCM1-216ENST00000522777 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.38□□□□□ -0.11
PCM1-216ENST00000522777 NISCHQ9Y2I1 1504 aa14.34□□□□□ -0.11
PCM1-216ENST00000522777 CHGAP10645 457 aaKnown RBP14.32□□□□□ -0.12
PCM1-216ENST00000522777 DCAF8Q5TAQ9 597 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 231.1 ms