Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMCO4Q9NRQ5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMCO4Q9NRQ5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMCO4Q9NRQ5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.9■□□□□ 0.3
SMCO4Q9NRQ5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SMCO4Q9NRQ5 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC16.89■□□□□ 0.3
SMCO4Q9NRQ5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.89■□□□□ 0.3
SMCO4Q9NRQ5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SMCO4Q9NRQ5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SMCO4Q9NRQ5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 GABARAPL3-202ENST00000624044 1851 ntBASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 AC098818.2-201ENST00000564925 2320 ntBASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 MIR762-201ENST00000390236 83 ntBASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMCO4Q9NRQ5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 MIR6090-201ENST00000622481 60 ntBASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
SMCO4Q9NRQ5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 PCDHAC2-203ENST00000615316 3011 ntBASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMCO4Q9NRQ5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC16.86■□□□□ 0.29
SMCO4Q9NRQ5 AL359258.2-201ENST00000564063 1566 ntBASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMCO4Q9NRQ5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms