Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.83■□□□□ 0.61
VRK1Q99986 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VRK1Q99986 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.83■□□□□ 0.6
VRK1Q99986 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK1Q99986 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.83■□□□□ 0.6
VRK1Q99986 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.83■□□□□ 0.6
VRK1Q99986 AC087623.3-201ENST00000607047 1098 ntBASIC18.83■□□□□ 0.6
VRK1Q99986 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.83■□□□□ 0.6
VRK1Q99986 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.83■□□□□ 0.6
VRK1Q99986 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
VRK1Q99986 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK1Q99986 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VRK1Q99986 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VRK1Q99986 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VRK1Q99986 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VRK1Q99986 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK1Q99986 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VRK1Q99986 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK1Q99986 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK1Q99986 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK1Q99986 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VRK1Q99986 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VRK1Q99986 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.81■□□□□ 0.6
VRK1Q99986 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VRK1Q99986 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.81■□□□□ 0.6
VRK1Q99986 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VRK1Q99986 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK1Q99986 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.81■□□□□ 0.6
VRK1Q99986 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.81■□□□□ 0.6
VRK1Q99986 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VRK1Q99986 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.81■□□□□ 0.6
VRK1Q99986 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VRK1Q99986 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK1Q99986 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 AL353803.4-201ENST00000565882 1934 ntBASIC18.8■□□□□ 0.6
VRK1Q99986 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 AC104564.3-201ENST00000582367 638 ntBASIC18.8■□□□□ 0.6
VRK1Q99986 AC004687.1-201ENST00000579003 1625 ntBASIC18.8■□□□□ 0.6
VRK1Q99986 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK1Q99986 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK1Q99986 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VRK1Q99986 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VRK1Q99986 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VRK1Q99986 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VRK1Q99986 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.79■□□□□ 0.6
VRK1Q99986 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.79■□□□□ 0.6
VRK1Q99986 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VRK1Q99986 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
VRK1Q99986 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 MIR572-201ENST00000384983 95 ntBASIC18.78■□□□□ 0.6
VRK1Q99986 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.78■□□□□ 0.6
VRK1Q99986 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK1Q99986 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.78■□□□□ 0.6
VRK1Q99986 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.78■□□□□ 0.6
VRK1Q99986 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VRK1Q99986 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
VRK1Q99986 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK1Q99986 MIR6084-201ENST00000622012 110 ntBASIC18.77■□□□□ 0.6
VRK1Q99986 AL358852.1-201ENST00000623174 1268 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms